Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

v3.5.5 #1295

Merged
merged 31 commits into from
Mar 8, 2024
Merged

v3.5.5 #1295

merged 31 commits into from
Mar 8, 2024

Commits on Nov 16, 2023

  1. drop 3.7 support

    @WardDeb
    WardDeb committed Nov 16, 2023
    Configuration menu
    Copy the full SHA
    4fa308a View commit details
    Browse the repository at this point in the history

  2. doc content update

    @WardDeb
    WardDeb committed Nov 16, 2023
    Configuration menu
    Copy the full SHA
    65d55c3 View commit details
    Browse the repository at this point in the history

  3. pin doc versions

    @WardDeb
    WardDeb committed Nov 16, 2023
    Configuration menu
    Copy the full SHA
    530b897 View commit details
    Browse the repository at this point in the history

  4. drop py3.7 support, include 3.12

    @WardDeb
    WardDeb committed Nov 16, 2023
    Configuration menu
    Copy the full SHA
    7fa48fd View commit details
    Browse the repository at this point in the history

  5. galaxy rapper version boost

    @WardDeb
    WardDeb committed Nov 16, 2023
    Configuration menu
    Copy the full SHA
    cf307c6 View commit details
    Browse the repository at this point in the history

  6. importlib simplified

    @WardDeb
    WardDeb committed Nov 16, 2023
    Configuration menu
    Copy the full SHA
    0286701 View commit details
    Browse the repository at this point in the history

  7. include repo pip install

    @WardDeb
    WardDeb committed Nov 16, 2023
    Configuration menu
    Copy the full SHA
    9574e76 View commit details
    Browse the repository at this point in the history

  8. switch pip&docreqs build

    @WardDeb
    WardDeb committed Nov 16, 2023
    Configuration menu
    Copy the full SHA
    711c12c View commit details
    Browse the repository at this point in the history

  9. flake fix

    @WardDeb
    WardDeb committed Nov 16, 2023
    Configuration menu
    Copy the full SHA
    73d03aa View commit details
    Browse the repository at this point in the history

Commits on Nov 23, 2023

  1. Merge pull request #1277 from deeptools/docs_pyreqs 

    Docs pyreqs
    @WardDeb
    WardDeb authored Nov 23, 2023
    Configuration menu
    Copy the full SHA
    484f30d View commit details
    Browse the repository at this point in the history

  2. drop deepblue support

    @WardDeb
    WardDeb committed Nov 23, 2023
    Configuration menu
    Copy the full SHA
    80b646b View commit details
    Browse the repository at this point in the history

Commits on Dec 1, 2023

  1. drop unused imports due to deepblue drop, flake fixes

    @WardDeb
    WardDeb committed Dec 1, 2023
    Configuration menu
    Copy the full SHA
    eb4ea28 View commit details
    Browse the repository at this point in the history

  2. remove tight_layout deprecation, change default to constrained layout

    @WardDeb
    WardDeb committed Dec 1, 2023
    Configuration menu
    Copy the full SHA
    611095a View commit details
    Browse the repository at this point in the history

  3. include in changes

    @WardDeb
    WardDeb committed Dec 1, 2023
    Configuration menu
    Copy the full SHA
    1e3fa9f View commit details
    Browse the repository at this point in the history

Commits on Jan 9, 2024

  1. Merge pull request #1282 from deeptools/plotheatmap_ymax_mpl 

    drop deepblue support, heatmapper constrained layout,
    @WardDeb
    WardDeb authored Jan 9, 2024
    Configuration menu
    Copy the full SHA
    d027314 View commit details
    Browse the repository at this point in the history

  2. purge table layout forcing to keep scrolleable tables

    @WardDeb
    WardDeb committed Jan 9, 2024
    Configuration menu
    Copy the full SHA
    c7049a0 View commit details
    Browse the repository at this point in the history

  3. docs rtd theme to 2.0.0

    @WardDeb
    WardDeb committed Jan 9, 2024
    Configuration menu
    Copy the full SHA
    23523e7 View commit details
    Browse the repository at this point in the history

  4. include ESS for T2T + GRCz11, recheck khmer generated ones

    @WardDeb
    WardDeb committed Jan 9, 2024
    Configuration menu
    Copy the full SHA
    7cdab56 View commit details
    Browse the repository at this point in the history

  5. include doc changes in CHANGES

    @WardDeb
    WardDeb committed Jan 9, 2024
    Configuration menu
    Copy the full SHA
    7b6a433 View commit details
    Browse the repository at this point in the history

  6. revert back to upload_artifact v3 for now

    @WardDeb
    WardDeb committed Jan 9, 2024
    Configuration menu
    Copy the full SHA
    4c3545d View commit details
    Browse the repository at this point in the history

  7. namechange of artifact in test

    @WardDeb
    WardDeb committed Jan 9, 2024
    Configuration menu
    Copy the full SHA
    11343cb View commit details
    Browse the repository at this point in the history

  8. pin upload artifact

    @WardDeb
    WardDeb committed Jan 9, 2024
    Configuration menu
    Copy the full SHA
    9dd5c03 View commit details
    Browse the repository at this point in the history

Commits on Jan 10, 2024

  1. Merge pull request #1285 from deeptools/ESS 

    effective genome sizes in docs
    @WardDeb
    WardDeb authored Jan 10, 2024
    Configuration menu
    Copy the full SHA
    5790f38 View commit details
    Browse the repository at this point in the history

Commits on Jan 17, 2024

  1. sched_getaffinity inclusion for availProcessors

    @WardDeb
    WardDeb committed Jan 17, 2024
    Configuration menu
    Copy the full SHA
    11d48b6 View commit details
    Browse the repository at this point in the history

  2. flake parser

    @WardDeb
    WardDeb committed Jan 17, 2024
    Configuration menu
    Copy the full SHA
    ae7aed4 View commit details
    Browse the repository at this point in the history

  3. include parser fix scalefacestimation

    @WardDeb
    WardDeb committed Jan 17, 2024
    Configuration menu
    Copy the full SHA
    8fc7c79 View commit details
    Browse the repository at this point in the history

  4. Merge pull request #1287 from deeptools/overcommitted_cpus 

    Overcommitted cpus
    @WardDeb
    WardDeb authored Jan 17, 2024
    Configuration menu
    Copy the full SHA
    f2b1254 View commit details
    Browse the repository at this point in the history

Commits on Mar 8, 2024

  1. omit travis tests in contributing doc

    @WardDeb
    WardDeb committed Mar 8, 2024
    Configuration menu
    Copy the full SHA
    7c14815 View commit details
    Browse the repository at this point in the history

  2. drop python 3.7 as lowest version in test env

    @WardDeb
    WardDeb committed Mar 8, 2024
    Configuration menu
    Copy the full SHA
    cbf623b View commit details
    Browse the repository at this point in the history

  3. planemo test 3.8 minimal version

    @WardDeb
    WardDeb committed Mar 8, 2024
    Configuration menu
    Copy the full SHA
    c0bac6d View commit details
    Browse the repository at this point in the history

  4. Merge pull request #1294 from deeptools/cicd 

    github action changes for python 3.7 drop
    @WardDeb
    WardDeb authored Mar 8, 2024
    Configuration menu
    Copy the full SHA
    5440be3 View commit details
    Browse the repository at this point in the history