-
Notifications
You must be signed in to change notification settings - Fork 212
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
Merge pull request #1224 from deeptools/develop
Develop
- Loading branch information
Showing
10 changed files
with
99 additions
and
167 deletions.
There are no files selected for viewing
This file was deleted.
Oops, something went wrong.
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,58 @@ | ||
name: Planemo | ||
on: [push, pull_request] | ||
env: | ||
GALAXY_BRANCH: release_22.05 | ||
jobs: | ||
planemo_test: | ||
name: Planemo test | ||
runs-on: ubuntu-latest | ||
strategy: | ||
matrix: | ||
chunk: [1, 2, 3] | ||
steps: | ||
- uses: actions/checkout@v1 | ||
- uses: "dpryan79/github-actions/@master" | ||
- name: planemo | ||
run: | | ||
source activate foo | ||
conda update -c conda-forge -c bioconda samtools | ||
./.planemo.sh ${{ matrix.chunk }} ${{ env.GALAXY_BRANCH }} | ||
- uses: actions/upload-artifact@v3 | ||
with: | ||
name: 'Tool test output ${{ matrix.chunk }}' | ||
path: upload | ||
planemo_combine_outputs: | ||
name: Combine chunked test results | ||
needs: planemo_test | ||
runs-on: ubuntu-latest | ||
strategy: | ||
matrix: | ||
python-version: ['3.7'] | ||
steps: | ||
- uses: actions/download-artifact@v3 | ||
with: | ||
path: artifacts | ||
- uses: actions/setup-python@v4 | ||
with: | ||
python-version: ${{ matrix.python-version }} | ||
- name: Cache .cache/pip | ||
uses: actions/cache@v3 | ||
id: cache-pip | ||
with: | ||
path: ~/.cache/pip | ||
key: pip_cache_py_${{ matrix.python-version }}_gxy_${{ env.GALAXY_BRANCH }} | ||
- name: Combine outputs | ||
uses: galaxyproject/planemo-ci-action@v1 | ||
id: combine | ||
with: | ||
mode: combine | ||
html-report: true | ||
- uses: actions/upload-artifact@v3 | ||
with: | ||
name: 'All tool test results' | ||
path: upload | ||
- name: Check outputs | ||
uses: galaxyproject/planemo-ci-action@v1 | ||
id: check | ||
with: | ||
mode: check |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file was deleted.
Oops, something went wrong.
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Oops, something went wrong.