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Releases: dbmi-bgm/granite

0.2.0

20 Apr 19:55
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updates to support python 3.7+

0.1.13

27 Aug 15:43
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added SV qcVCF

0.1.12

14 Jun 14:47
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  • changed novoCaller to accept PROBAND listed first in triofiles argument
  • changed comHet to automatically get the first three sampleIDs provided in trio if there are more

0.1.11

31 Mar 20:51
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  • minor change in comHet to exclude variant 0/1 in both parents from compound Het calculation

0.1.10

17 Mar 20:16
b451781
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  • added UTF-8 encoding, now forced by vcf_parser
  • reformat pedigree_parser function to read pedigree

0.1.9

03 Mar 17:08
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  • added support for minimal VCF with no samples in vcf_parser
  • extended validateVCF to use different variant types other than SNV

0.1.8

29 Jan 22:02
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ver update

0.1.7

25 Jan 16:12
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Added filter to cleanVCF to drop variants that remain with no VEP annotations after cleaning

0.1.6

20 Jan 20:05
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minor change in matching the header fields to find indexes in VEP like definitions

0.1.5

12 Jan 17:03
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  • added support for gzipped vcf files
  • added methods to write header and variants in a cleaner way to vcf parser