Releases: dbmi-bgm/granite
Releases · dbmi-bgm/granite
0.2.0
updates to support python 3.7+
0.1.12
- changed novoCaller to accept PROBAND listed first in triofiles argument
- changed comHet to automatically get the first three sampleIDs provided in trio if there are more
0.1.11
- minor change in comHet to exclude variant 0/1 in both parents from compound Het calculation
0.1.10
- added UTF-8 encoding, now forced by vcf_parser
- reformat pedigree_parser function to read pedigree
0.1.9
- added support for minimal VCF with no samples in vcf_parser
- extended validateVCF to use different variant types other than SNV
0.1.7
Added filter to cleanVCF to drop variants that remain with no VEP annotations after cleaning
0.1.6
minor change in matching the header fields to find indexes in VEP like definitions
0.1.5
- added support for gzipped vcf files
- added methods to write header and variants in a cleaner way to vcf parser