Merge pull request #132 from kushalbakshi/main

Fix docs tutorials in dark mode
datajoint · Apr 28, 2023 · 66e5944 · 66e5944
2 parents 97d1106 + 49013dc
commit 66e5944
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Showing 7 changed files with 17 additions and 7 deletions.
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -3,6 +3,11 @@
 Observes [Semantic Versioning](https://semver.org/spec/v2.0.0.html) standard and
 [Keep a Changelog](https://keepachangelog.com/en/1.0.0/) convention.
 
+## [0.5.6] - 2023-04-28
+
++ Fix - `.ipynb` output in tutorials is not visible in dark mode.
++ Fix - typos in docstrings.
+
 ## [0.5.5] - 2023-04-06
 
 + Update - Bump `element-interface` requirement to `0.5.1`.
@@ -88,6 +93,7 @@ Observes [Semantic Versioning](https://semver.org/spec/v2.0.0.html) standard and
 + Add - `scan` and `imaging` modules
 + Add - Readers for `ScanImage`, `ScanBox`, `Suite2p`, `CaImAn`
 
+[0.5.6]: https://github.com/datajoint/element-calcium-imaging/releases/tag/0.5.6
 [0.5.5]: https://github.com/datajoint/element-calcium-imaging/releases/tag/0.5.5
 [0.5.4]: https://github.com/datajoint/element-calcium-imaging/releases/tag/0.5.4
 [0.5.3]: https://github.com/datajoint/element-calcium-imaging/releases/tag/0.5.3

diff --git a/docs/src/.overrides/assets/stylesheets/extra.css b/docs/src/.overrides/assets/stylesheets/extra.css
@@ -95,3 +95,7 @@ html a[title="YouTube"].md-social__link svg {
     /* previous/next text */
     /* --md-footer-fg-color: var(--dj-white); */
 }
+
+[data-md-color-scheme="slate"] .jupyter-wrapper .Table Td {
+    color: var(--dj-black)
+}
diff --git a/docs/src/tutorials/index.md b/docs/src/tutorials/index.md
@@ -21,7 +21,7 @@ analysis.
 ## Notebooks
 
 Each of the notebooks in the workflow
-([download here](https://github.com/datajoint/workflow-calcium-imaging/tree/main/notebooks)
+([download here](https://github.com/datajoint/workflow-calcium-imaging/tree/main/notebooks))
 steps through ways to interact with the Element itself. For convenience, these notebooks
 are also rendered as part of this site. To try out the notebooks in an online
 Jupyter environment with access to example data, visit

diff --git a/element_calcium_imaging/imaging.py b/element_calcium_imaging/imaging.py
@@ -201,7 +201,7 @@ class MaskType(dj.Lookup):
     """Available labels for segmented masks (e.g. 'soma', 'axon', 'dendrite', 'neuropil').
 
     Attributes:
-        masky_type (str): Mask type.
+        mask_type (str): Mask type.
     """
 
     definition = """# Possible types of a segmented mask

diff --git a/element_calcium_imaging/imaging_no_curation.py b/element_calcium_imaging/imaging_no_curation.py
@@ -201,7 +201,7 @@ class MaskType(dj.Lookup):
     """Available labels for segmented masks (e.g. 'soma', 'axon', 'dendrite', 'neuropil').
 
     Attributes:
-        masky_type (str): Mask type.
+        mask_type (str): Mask type.
     """
 
     definition = """# Possible types of a segmented mask
@@ -221,8 +221,8 @@ class ProcessingTask(dj.Manual):
     This table defines a calcium imaging processing task for a combination of a
     `Scan` and a `ProcessingParamSet` entries, including all the inputs (scan, method,
     method's parameters). The task defined here is then run in the downstream table
-    Processing. This table supports definitions of both loading of pre-generated results
-    and the triggering of new analysis for all supported analysis methods
+    `Processing`. This table supports definitions of both loading of pre-generated results
+    and the triggering of new analysis for all supported analysis methods.
 
     Attributes:
         scan.Scan (foreign key):

diff --git a/element_calcium_imaging/imaging_preprocess.py b/element_calcium_imaging/imaging_preprocess.py
@@ -385,7 +385,7 @@ class MaskType(dj.Lookup):
     """Available labels for segmented masks (e.g. 'soma', 'axon', 'dendrite', 'neuropil').
 
     Attributes:
-        masky_type (str): Mask type.
+        mask_type (str): Mask type.
     """
 
     definition = """# Possible types of a segmented mask

diff --git a/element_calcium_imaging/version.py b/element_calcium_imaging/version.py
@@ -1,2 +1,2 @@
 """Package metadata."""
-__version__ = "0.5.5"
+__version__ = "0.5.6"