Update 20 packages

[carpentries-bot]

🤖 This is an automated build

This will update 20 packages in your lesson with the following versions:

# NEW OR REMOVED PACKAGES -------------------------------
- MASS  [required by ggplot2]
- mgcv  [required by ggplot2]
- lattice   [0.22-5 -> *]
- MASS      [7.3-60 -> *]
- Matrix    [1.6-4 -> *]
- mgcv      [1.9-1 -> *]
- nlme      [3.1-164 -> *]

# CRAN -----------------------------------------------------------------------
- data.table   [1.14.10 -> 1.15.0]
- DBI          [1.2.0 -> 1.2.1]
- digest       [0.6.33 -> 0.6.34]
- glue         [repo: RSPM -> CRAN; ver: 1.6.2 -> 1.7.0]
- patchwork    [repo: RSPM -> CRAN; ver: 1.1.3 -> 1.2.0]
- ps           [1.7.5 -> 1.7.6]
- Rcpp         [1.0.11 -> 1.0.12]
- readr        [2.1.4 -> 2.1.5]
- reprex       [2.0.2 -> 2.1.0]
- rlang        [1.1.2 -> 1.1.3]
- RSQLite      [2.3.4 -> 2.3.5]
- tidyr        [1.3.0 -> 1.3.1]
- timechange   [0.2.0 -> 0.3.0]
- uuid         [repo: RSPM -> CRAN; ver: 1.1-1 -> 1.2-0]
- withr        [2.5.2 -> 3.0.0]
- lattice      [* -> 0.22-5]
- MASS         [* -> 7.3-60.0.1]
- Matrix       [* -> 1.6-5]
- mgcv         [* -> 1.9-1]

# RSPM -----------------------------------------------------------------------
- nlme         [* -> 3.1-164]

⏱️ In a few minutes, a comment will appear that will show you how the output has changed based on these updates.

If you want to inspect these changes locally, you can use the following code to check out a new branch:

git fetch origin update/packages
git checkout update/packages

• Auto-generated by create-pull-request on 2024-02-06

[github-actions]

Thank you!

Thank you for your pull request 😃

🤖 This automated message can help you check the rendered files in your submission for clarity. If you have any questions, please feel free to open an issue in {sandpaper}.

If you have files that automatically render output (e.g. R Markdown), then you should check for the following:

• 🎯 correct output
• 🖼️ correct figures
• ❓ new warnings
• ‼️ new errors

Rendered Changes

🔍 Inspect the changes: https://github.com/datacarpentry/R-ecology-lesson/compare/md-outputs..md-outputs-PR-883

The following changes were observed in the rendered markdown documents:

 00-before-we-start.md                              |   30 +-
 01-intro-to-r.md                                   |  108 +-
 02-starting-with-data.md                           |  108 +-
 03-dplyr.md                                        |  110 +-
 04-visualization-ggplot2.md                        |   84 +-
 05-r-and-databases.md                              |  106 +-
 CITATION.md                                        |   10 +-
 config.yaml (gone)                                 |   86 --
 ...2-rendered-average-weight-time-facet-both-1.png |  Bin 51015 -> 51022 bytes
 ...red-average-weight-time-facet-sex-columns-1.png |  Bin 39160 -> 39166 bytes
 ...ndered-average-weight-time-facet-sex-rows-1.png |  Bin 55654 -> 55659 bytes
 ...tion-ggplot2-rendered-boxplot-with-points-1.png |  Bin 79688 -> 79185 bytes
 ...ation-ggplot2-rendered-color-by-species-1-1.png |  Bin 66713 -> 66778 bytes
 ...n-ggplot2-rendered-facet-by-genus-and-sex-1.png |  Bin 40994 -> 40996 bytes
 ...ion-ggplot2-rendered-integrating-the-pipe-1.png |  Bin 49843 -> 49834 bytes
 ...species-year-with-right-labels-xfont-size-1.png |  Bin 52377 -> 53030 bytes
 ...2-rendered-number-species-year-with-theme-1.png |  Bin 53740 -> 54235 bytes
 ...zation-ggplot2-rendered-patchwork-example-1.png |  Bin 58337 -> 58217 bytes
 ...n-ggplot2-rendered-pipes-and-manipulation-1.png |  Bin 49843 -> 49834 bytes
 ...ggplot2-rendered-scatter-challenge-answer-1.png |  Bin 33090 -> 33095 bytes
 ...-ggplot2-rendered-time-series-with-colors-1.png |  Bin 49843 -> 49834 bytes
 ...ization-ggplot2-rendered-unnamed-chunk-10-1.png |  Bin 97516 -> 97340 bytes
 ...ization-ggplot2-rendered-unnamed-chunk-11-1.png |  Bin 64904 -> 64886 bytes
 ...lization-ggplot2-rendered-unnamed-chunk-9-1.png |  Bin 82971 -> 82612 bytes
 md5sum.txt                                         |   34 +-
 renv.lock (gone)                                   | 1591 --------------------
 26 files changed, 295 insertions(+), 1972 deletions(-)

What does this mean?

If you have source files that require output and figures to be generated (e.g. R Markdown), then it is important to make sure the generated figures and output are reproducible.

This output provides a way for you to inspect the output in a diff-friendly manner so that it's easy to see the changes that occur due to new software versions or randomisation.

⏱️ Updated at 2024-06-04 00:27:48 +0000