Initial commit

.Rprofile

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+source("renv/activate.R")

.gitignore

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+# See <https://git-scm.com/docs/gitignore>.
+
+_freeze/
+.quarto/
+.Rapp.history
+.RData
+.Renviron
+.Rhistory
+.Rproj.user
+.Ruserdata
+.secrets

LICENSE.md

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+# MIT License
+
+Copyright (c) 2024 Daniel Vartanian
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

R/_dev.R

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+# # For development use only (comment the code after use (Ctrl + Shift + C)).
+#
+# .rs.restartR()
+# .libPaths()
+# cffr::cff_validate()
+# knitr::clean_cache()
+# lintr::use_lintr()
+# lintr::lint_dir("R")
+# normalizePath(readClipboard(), "/", mustWork = FALSE)
+# renv::init()
+# renv::equip()
+# renv::activate()
+# renv::deactivate()
+# renv::status()
+# renv::dependencies("R/quarto-setup.R")
+# renv::install()
+# renv::update()
+# renv::restore()
+# renv::snapshot()
+# renv::clean(actions = "unsed.packages")
+# rutils:::bbt_scan_citation_keys()
+# rutils:::bbt_write_quarto_bib()
+# rutils:::set_quarto_speel_check()
+# rutils:::gather_words_from_spell_check(pattern = "\\.qmd$|\\.Rmd$")
+# rutils:::spell_check_quarto(dir = "", pattern = "\\.qmd$|\\.Rmd$")
+# rutils:::update_quarto_wordlist(dir = "", pattern = "\\.qmd$|\\.Rmd$")
+# rutils:::clean_quarto_mess()
+# rutils:::quarto_status("drafting")
+# spelling::spell_check_files("index.qmd")
+# urlchecker::url_check()
+# urlchecker::url_update()
+
+# googlesheets4::gs4_auth(cache = ".secrets", email = "[email protected]")
+
+# # Quarto (see <https://quarto.org/docs/projects/quarto-projects.html>)
+#
+# quarto render

R/quarto-setup.R

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+## Based on <https://github.com/hadley/r4ds/blob/main/_common.R>.
+
+# Load libraries
+
+# library(here, quietly = FALSE, verbose = FALSE)
+# library(knitr, quietly = FALSE, verbose = FALSE)
+# library(rutils, quietly = FALSE, verbose = FALSE)
+
+library(downlit, quietly = FALSE, verbose = FALSE)
+library(httpuv, quietly = FALSE, verbose = FALSE)
+library(magrittr, quietly = FALSE, verbose = FALSE)
+library(ggplot2, quietly = FALSE, verbose = FALSE)
+library(xml2, quietly = FALSE, verbose = FALSE)
+
+# Set variables -----
+
+set.seed(2024)
+
+# Set knitr -----
+
+knitr::clean_cache()
+
+knitr::opts_chunk$set(
+  comment = "#>",
+  collapse = TRUE,
+  root.dir = here::here()
+)
+
+# Set general options -----
+
+options(
+  dplyr.print_min = 6,
+  dplyr.print_max = 6,
+  pillar.max_footer_lines = 2,
+  pillar.min_chars = 15,
+  stringr.view_n = 6,
+  pillar.bold = TRUE,
+  width = 77 # 80 - 3 for #> comment
+)
+
+# Set `ggplot2` -----
+
+ggplot2::theme_set(
+  ggplot2::theme_gray()
+)
+
+# Set `googlesheets4` -----
+
+googlesheets4::gs4_auth(cache = ".secrets", email = "[email protected]")
+
+# Run `rbbt` -----
+
+# (2024-06-05)
+# This function only works with BetterBibTeX (BBT) for Zotero version v6.7.140
+# or lower.
+
+rutils:::bbt_write_quarto_bib(
+  bib_file = here::here("references.bib"),
+  dir = "",
+  pattern = "\\.qmd$",
+  wd = here::here()
+)

README.md

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+# estela
+
+<!-- badges: start -->
+[![Project Status: Inactive – The project has reached a stable, usable state but is no longer being actively developed; support/maintenance will be provided as time allows.](https://www.repostatus.org/badges/latest/inactive.svg)](https://www.repostatus.org/#inactive)
+[![License: MIT](https://img.shields.io/badge/license-MIT-green)](https://choosealicense.com/licenses/mit/)
+<!-- badges: end -->
+
+This repository contains an analysis focused on plotting data related to the food consumption of Brazilian children aged 2 to 4 years, as monitored by Brazil's Food and Nutrition Surveillance System ([SISVAN](https://sisaps.saude.gov.br/sisvan/)) in 2019. The report is available [here](https://danielvartan.github.io/estela/).

WORDLIST

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+SISVAN
+ultraprocessed
+UPF

_quarto.yml

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+editor: source
+
+execute:
+  cache: false
+  freeze: false
+
+project:
+  type: website
+  output-dir: docs
+  render: [index.qmd]
+
+title: "SISVAN 2019"
+author: "Daniel Vartanian"
+  # name: "Daniel Vartanian"
+  # orcid: 0000-0001-7782-759X
+  # url: https://linktr.ee/danielvartan
+  # email: [email protected]
+  # corresponding: true
+  # affiliation:
+  #   - name: University of São Paulo
+  #   - Country: Brazil
+  #   - url: https://www.usp.br
+keyword: >
+  data science. data visualization. child health. child-nutrition. malnutrition.
+  nutritional-epidemiology. global-syndemic. unified-health-system. brazil.
+date: today
+date-format: "YYYY-MM-DD"
+
+website:
+  repo-url: https://github.com/danielvartan/estela/
+  site-url: https://danielvartan.github.io/estela/
+  issue-url: https://github.com/danielvartan/estela/issues/
+  repo-branch: main
+  repo-actions: [edit, issue]
+  search: false
+  navbar:
+    title: false
+    background: dark
+    left:
+      - icon: github
+        href: https://github.com/danielvartan/estela
+        aria-label: GitHub
+
+format:
+  html:
+    locale: en
+    language: en-us
+    code-fold: show
+    code-link: true
+    tbl-cap-location: top
+    callout-appearance: simple
+    csl: csl/english-apa-author-date.csl
+    theme: [cosmo, scss/web.scss]
+
+google-scholar: false
+bibliography: references.bib