Activate deepsource coverage #13

	# This workflow will install Python dependencies, run tests and lint with a variety of Python versions
	# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions

	name: builds

	on:
	push:
	# Run when main is updated
	branches: [ main ]
	pull_request:
	# Run on pull requests against main
	branches: [ main ]

	jobs:
	build:
	runs-on: ${{ matrix.os }}
	strategy:
	matrix:
	python-version: ['3.8', '3.9', '3.10']
	os: [ubuntu-latest]
	env:
	OS: ${{ matrix.os }}
	PYTHON: ${{ matrix.python-version }}

	steps:
	- uses: actions/checkout@main
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@main
	with:
	python-version: ${{ matrix.python-version }}
	- name: Install dependencies
	run: \|
	python -m pip install --upgrade pip
	pip install flake8 pytest pytest-cov ipython
	- name: Lint with flake8
	run: \|
	# stop the build if there are Python syntax errors or undefined names
	flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
	# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
	flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
	- name: Test and generate coverage report
	# Run coverage analysis on pytest tests
	run: \|
	pip install .
	py.test --cov-report=xml --cov=plantcv tests/
	- name: Upload coverage to Deepsource
	uses: deepsourcelabs/test-coverage-action@master
	with:
	key: python
	coverage-file: coverage.xml
	dsn: ${{ secrets.DEEPSOURCE_DSN }}
	env:
	DEEPSOURCE_DSN: ${{ secrets.DEEPSOURCE_DSN }}

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