This repository has the scripts used to compare the taxonomic and functional results produced by MEGAN and MEDUSA.
To run the scripts and reproduce the results you need to execute the script 01-InstallDependencies.R (Scripts folder).
For further inspections, the raw FASTQ files from all datasets are also available in the Data folder.
See Stack Overflow question 22277440 to solve problems related to the Rmpfr package installation.