dajmcdon latex files

paper/dajmcdon.bib

Easiest is to use this and another .bib, specific to your paper.

If you do need to add a reference to this .bib, then

1. The file is sorted by cite key.
2. The cite key is McDonaldBien2021 (last names of the first 2 authors in camel case followed by the 4 digit year).
3. If the cite key exists, add a lower case letter to disambiguate.
4. You should be able to add a reference anywhere in the file, then run

bibtool -s dajmcdon.bib -o dajmcdon.bib

to sort and correctly generate the cite key. (If you need to install bibtool, you can use Homebrew on a Mac brew install bib-tool.)

5. Try to avoid duplicates.
6. Please feel free to PR into this repo.

paper/dajmcdon.tex

• Uses ShorTeX for math macros, comments, and loading standard packages.
• Provides some descriptions of best practices.
• notes/*.tex is similar
• All figures for the paper should go in paper/fig

refs/

• This is intended to contain files for papers you may cite.
• Often best not to commit these publicly.

code/

• Self explanatory. It should be any scripts needed to generate the figures and produce analysis.
• I usually use a single .qmd/.Rmd file that may rely on some scripts for long running code. Otherwise, number the scripts in order.
• You may need a directory for data/ as well

tools/

These are used to update ShorTeX and dajmcdon.bib if you haven't in a while.

• tools/cp-bib will copy the remote bib file here, overwriting
• tools/cp-shortex will update ShorTeX, overwriting
• tools/make-arXiv will copy the paper, figures, and tex files, then zip them up for submission to arXiv.

Cleaning up junk

• git clean -xf