added error message if different alternative splicing pattern of rmat…

…s is used
daisybio · Nov 13, 2024 · d4b89c1 · d4b89c1
1 parent 309f612
commit d4b89c1
Showing 1 changed file with 5 additions and 1 deletion.
diff --git a/container/domain/Process/nease_output.py b/container/domain/Process/nease_output.py
@@ -327,8 +327,12 @@ def match_name_with_format(filename):
                     'diff': 'Whippet',
                     'whippet': 'Whippet',
                     'mats': 'rmats'}
+    rmats_alternatives = ['a3ss.mats','a5ss.mats','mxe.mats','ri.mats']
 
     for name, format in name_matches.items():
         if name in filename.lower():
             return f"{format} input"
-    return None
+    for name in rmats_alternatives:
+        if name in filename.lower():
+            return "skipped exon (SE.MATS.JC[EC].txt) pattern of rMATS. A3SS, A5SS, MXE, and RI are not supported"
+    return None