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Get workflows running again
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* Remove conda-version setting because it constrained python to 3.10 or 3.11 but that caused a conflict with a pinned python 3.12.
* pangolin_macos.yml needs setup-miniconda@v2 for now because it sets architecture to x86_64, and setup-miniconda@v3 uses arm64 which is not working for usher yet.  pangolin_macos.yml also needs to set miniconda-version to latest so conda installation doesn't fail.
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AngieHinrichs committed Nov 21, 2024
1 parent b49546e commit d6b1323
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Showing 2 changed files with 4 additions and 7 deletions.
6 changes: 2 additions & 4 deletions .github/workflows/pangolin.yml
Original file line number Diff line number Diff line change
Expand Up @@ -12,14 +12,12 @@ jobs:
matrix:
os: ["ubuntu-latest"]
steps:
- uses: actions/checkout@v2
- uses: conda-incubator/setup-miniconda@v2
- uses: actions/checkout@v4
- uses: conda-incubator/setup-miniconda@v3
with:
environment-file: environment.yml
activate-environment: pangolin
channels: conda-forge,bioconda,defaults
conda-version: "23.5.0"
mamba-version: "*"
- name: Install pangolin
run: pip install -e .
- name: Check pangolin version
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5 changes: 2 additions & 3 deletions .github/workflows/pangolin_macos.yml
Original file line number Diff line number Diff line change
Expand Up @@ -12,14 +12,13 @@ jobs:
matrix:
os: ["macos-latest"]
steps:
- uses: actions/checkout@v2
- uses: actions/checkout@v4
- uses: conda-incubator/setup-miniconda@v2
with:
environment-file: environment.yml
activate-environment: pangolin
channels: conda-forge,bioconda,defaults
conda-version: "23.5.0"
mamba-version: "*"
miniconda-version: "latest"
- name: Install pangolin
run: pip install -e .
- name: Check pangolin version
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