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fixes for BiocCheck #19

fixes for BiocCheck

fixes for BiocCheck #19

Triggered via push September 13, 2024 11:00
Status Failure
Total duration 1h 5m 49s
Billable time 2h 36m
Artifacts 2

check-bioc.yml

on: push
Matrix: build-check
docker-build-and-push
0s
docker-build-and-push
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14 errors and 10 warnings
macOS-latest (4.4)
--- re-building ‘annotate_mixtures.Rmd’ using rmarkdown
macOS-latest (4.4)
processing vignette 'annotate_mixtures.Rmd' failed with diagnostics:
macOS-latest (4.4)
processing vignette 'exploring_mtox.Rmd' failed with diagnostics:
macOS-latest (4.4)
processing vignette 'Extending_MetMashR.Rmd' failed with diagnostics:
macOS-latest (4.4)
processing vignette 'using_MetMashR.Rmd' failed with diagnostics:
macOS-latest (4.4)
Vignette re-building failed.
macOS-latest (4.4)
Failed to install 'MetMashR' from local:
macOS-latest (4.4)
Process completed with exit code 1.
windows-latest (4.4)
Running examples in 'MetMashR-Ex.R' failed
windows-latest (4.4)
object 'check' not found
windows-latest (4.4)
R CMD check found ERRORs
windows-latest (4.4)
Test failures
windows-latest (4.4)
Process completed with exit code 1.
ubuntu-latest (4.4)
Process completed with exit code 1.
macOS-latest (4.4)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, actions/cache@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
macOS-latest (4.4)
No files were found with the provided path: check. No artifacts will be uploaded.
macOS-latest (4.4)
harfbuzz 9.0.0 is already installed and up-to-date. To reinstall 9.0.0, run: brew reinstall harfbuzz
macOS-latest (4.4)
macOS's Gatekeeper has been disabled for this Cask
windows-latest (4.4)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, actions/cache@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
windows-latest (4.4)
Found the following files with non-ASCII characters:
windows-latest (4.4)
Missing link or links in Rd file 'MTox700plus_database.Rd':
windows-latest (4.4)
Undocumented code objects:
windows-latest (4.4)
Documented arguments not in \usage in Rd file 'annotation_bar_chart.Rd':
ubuntu-latest (4.4)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, actions/cache@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/

Artifacts

Produced during runtime
Name Size
Linux-biocversion-devel-r-4.4-results Expired
28.8 MB
Windows-biocversion-devel-r-4.4-results Expired
26.4 MB