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Code for the master seminar "Unsupervised Anomaly Detection in Medical Imaging"

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Master Seminar - Unsupervised Anomaly Segmentation

This repository contains the PyTorch dataloader classes and an evaluation script to be used for the implementation of your models. It also contains an example model and trainer, a simple Autoencoder that can be used as a starting point for your projects.

Open Demo In Colab

Installation

When on your local machine

Clone this repository

git clone https://github.com/compai-lab/mad_seminar_ws23.git

Create (and activate) a new virtual environment (requires conda)

conda create --name mad python=3.9
conda activate mad

Install the required packages

cd mad_seminar_ws23
python -m pip install -r requirements.txt

Download and extract the data

wget <link you got from your supervisor>
unzip data.zip

When in Google Colab

Simply follow the instructions in main.ipynb

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Code for the master seminar "Unsupervised Anomaly Detection in Medical Imaging"

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