Issue #74: Testing unit tests for osfclient.

compSPI · May 15, 2022 · 4be65f0 · 4be65f0
1 parent f0898a8
commit 4be65f0
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Showing 2 changed files with 20 additions and 6 deletions.
diff --git a/ioSPI/datasets.py b/ioSPI/datasets.py
@@ -55,7 +55,8 @@ def __init__(
     def ls(self):
         """List all files in the project."""
         print(f"Listing files from OSF project: {self.project_id}...")
-        os.system("osf ls")
+        # os.system("osf ls")
+        os.system(f"/usr/share/miniconda/envs/ioSPI/bin/osf ls")
 
     def download(self, remote_path: str, local_path: str):
         """Download a file from an OSF project and save it locally.
@@ -79,7 +80,11 @@ def download(self, remote_path: str, local_path: str):
 
         full_remote_path = self.storage + "/" + remote_path
         print(f"Downloading {full_remote_path} to {local_path}...")
-        os.system(f"osf fetch {full_remote_path} {local_path}")
+        # os.system(f"osf fetch {full_remote_path} {local_path}")
+        os.system(
+            f"/usr/share/miniconda/envs/ioSPI/bin/osf fetch "
+            f"{full_remote_path} {local_path}"
+        )
         print("Done!")
 
     def upload(self, local_path: str, remote_path: str):
@@ -108,7 +113,11 @@ def upload(self, local_path: str, remote_path: str):
 
         full_remote_path = self.storage + "/" + remote_path
         print(f"Uploading {local_path} to {full_remote_path}...")
-        os.system(f"osf upload {local_path} {full_remote_path}")
+        # os.system(f"osf upload {local_path} {full_remote_path}")
+        os.system(
+            f"/usr/share/miniconda/envs/ioSPI/bin/osf upload "
+            f"{local_path} {full_remote_path}"
+        )
         print("Done!")
 
     def remove(self, remote_path: str):
@@ -128,5 +137,8 @@ def remove(self, remote_path: str):
 
         full_remote_path = self.storage + "/" + remote_path
         print(f"Removing {full_remote_path} in the project...")
-        os.system(f"osf remove {full_remote_path}")
+        # os.system(f"osf remove {full_remote_path}")
+        os.system(
+            f"/usr/share/miniconda/envs/ioSPI/bin/osf remove " f"{full_remote_path}"
+        )
         print("Done!")
diff --git a/tests/test_datasets.py b/tests/test_datasets.py
@@ -56,7 +56,8 @@ def test_upload_valid(setup, set_file_path):
     """Test the upload method."""
     setup.upload(set_file_path[0] + set_file_path[1], set_file_path[1])
     file_exists = False
-    file_list = os.popen("osf ls")
+    # file_list = os.popen("osf ls")
+    file_list = os.popen("/usr/share/miniconda/envs/ioSPI/bin/osf ls")
     line = file_list.readline()
     while line:
         file_exists = set_file_path[1] == line.split("/")[1].strip()
@@ -102,7 +103,8 @@ def test_remove_valid(setup, set_file_path):
     """Test the remove method."""
     setup.remove(set_file_path[1])
     file_exists = False
-    file_list = os.popen("osf ls")
+    # file_list = os.popen("osf ls")
+    file_list = os.popen("/usr/share/miniconda/envs/ioSPI/bin/osf ls")
     line = file_list.readline()
     while line:
         file_exists = set_file_path[1] == line.split("/")[1].strip()