unpack the reference

comorment · Oct 25, 2022 · fd737aa · fd737aa
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -13,6 +13,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 - popcorn.sif container (``md5sum: 4a0fce687b62d06540ce2d315f413ba9``)
   updated from https://github.com/ofrei/Popcorn/tree/fa1326c318859dee0f3ec884a25a2639c9311bd7
 - pysnptools dependency updated from 0.5.4 to 0.5.7 
+- unpack reference files
 
 ## [1.0.0] - 2022-10-21
 

diff --git a/README.md b/README.md
@@ -11,7 +11,6 @@ cp /tools/popcorn/test/* .
 ```
 
 For EUR and EAS populations the reference files are included in ``reference`` folder.
-Note that you may directly use compressed ``.gz`` files as an argument of the ``--cfile`` option in popcorn - no need to extract them
 
 # Important! - Set up Git LFS before cloning this repository
 

diff --git a/reference/.gitattributes b/reference/.gitattributes
@@ -1,2 +1,4 @@
 EUR_EAS_all_gen_eff.cscore.gz filter=lfs diff=lfs merge=lfs -text
 EUR_EAS_all_gen_imp.cscore.gz filter=lfs diff=lfs merge=lfs -text
+EUR_EAS_all_gen_eff.cscore filter=lfs diff=lfs merge=lfs -text
+EUR_EAS_all_gen_imp.cscore filter=lfs diff=lfs merge=lfs -text
diff --git a/reference/EUR_EAS_all_gen_eff.cscore b/reference/EUR_EAS_all_gen_eff.cscore
diff --git a/reference/EUR_EAS_all_gen_eff.cscore.gz b/reference/EUR_EAS_all_gen_eff.cscore.gz
diff --git a/reference/EUR_EAS_all_gen_imp.cscore b/reference/EUR_EAS_all_gen_imp.cscore
diff --git a/reference/EUR_EAS_all_gen_imp.cscore.gz b/reference/EUR_EAS_all_gen_imp.cscore.gz
-Original file line number
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@@ Expand Up / @@ -11,7 +11,6 @@ cp /tools/popcorn/test/* . @@
     ```
     For EUR and EAS populations the reference files are included in ``reference`` folder.
-    Note that you may directly use compressed ``.gz`` files as an argument of the ``--cfile`` option in popcorn - no need to extract them
     # Important! - Set up Git LFS before cloning this repository
@@ Expand Down @@