include EUR and EAS reference files

comorment · Oct 21, 2022 · 8998a8b · 8998a8b
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -12,4 +12,6 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 - popcorn.sif container (``md5sum: a7c6bc0f6140d7ef4705d2a53cda9e8e``)
   create from https://github.com/brielin/Popcorn/tree/ef4455a970d4104832cca02510c555d9220b1414
-
+- Pre-computed scores for EUR and EAS 1000 genomes populations downloaded from 
+  https://www.dropbox.com/sh/37n7drt7q4sjrzn/AAAa1HFeeRAE5M3YWG9Ac2Bta.
+  (as referenced in the original README file of the popcorn software)
diff --git a/README.md b/README.md
@@ -10,6 +10,9 @@ cp /tools/popcorn/test/* .
 ./test.bash
 ```
 
+For EUR and EAS populations the reference files are included in ``reference`` folder.
+Note that you may directly use compressed ``.gz`` files as an argument of the ``--cfile`` option in popcorn - no need to extract them
+
 # Important! - Set up Git LFS before cloning this repository
 
 Have a look [here](https://github.com/comorment/containers/blob/main/README.md#getting-started) if you're new to git or Git LFS.

diff --git a/reference/.gitattributes b/reference/.gitattributes
@@ -0,0 +1,2 @@
+EUR_EAS_all_gen_eff.cscore.gz filter=lfs diff=lfs merge=lfs -text
+EUR_EAS_all_gen_imp.cscore.gz filter=lfs diff=lfs merge=lfs -text
diff --git a/reference/EUR_EAS_all_gen_eff.cscore.gz b/reference/EUR_EAS_all_gen_eff.cscore.gz
diff --git a/reference/EUR_EAS_all_gen_imp.cscore.gz b/reference/EUR_EAS_all_gen_imp.cscore.gz
diff --git a/test.bash b/test.bash
Original file line number	Diff line number	Diff line change
		@@ -0,0 +1,2 @@
		EUR_EAS_all_gen_eff.cscore.gz filter=lfs diff=lfs merge=lfs -text
		EUR_EAS_all_gen_imp.cscore.gz filter=lfs diff=lfs merge=lfs -text