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201 changes: 201 additions & 0 deletions LICENSE
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22 changes: 14 additions & 8 deletions bin/combine.cpp
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Expand Up @@ -31,6 +31,10 @@

using namespace std;

// Update whenever we have a new Tag
std::string combineTagString = "v9.1.0";
//

int main(int argc, char **argv) {
using namespace boost;
namespace po = boost::program_options;
Expand Down Expand Up @@ -86,11 +90,11 @@ int main(int argc, char **argv) {
combiner.statOptions().add_options()
("toys,t", po::value<int>(&runToys)->default_value(0), "Number of Toy MC extractions")
("seed,s", po::value<int>(&seed)->default_value(123456), "Toy MC random seed")
("hintMethod,H", po::value<string>(&whichHintMethod)->default_value(""), "Run first this method to provide a hint on the result")
("hintMethod,H", po::value<string>(&whichHintMethod)->default_value(""), "First run this method to provide a hint on the result")
;
combiner.ioOptions().add_options()
("name,n", po::value<string>(&name)->default_value("Test"), "Name of the job, affects the name of the output tree")
("mass,m", po::value<float>(&iMass)->default_value(120.), "Higgs mass to store in the output tree")
("mass,m", po::value<float>(&iMass)->default_value(120.), "Mass to store in the output tree")
("dataset,D", po::value<string>(&dataset)->default_value("data_obs"), "Name of the dataset for observed limit - use this to replace dataset in workspace for example with a toy dataset. Format as file:workspace:object or file:object")
("dataMapName", po::value<string>(&dataMapName)->default_value("data_obs"), "Name of the dataset for observed limit pattern in the datacard")
("toysFile", po::value<string>(&toysFile)->default_value(""), "Read toy mc or other intermediate results from this file")
Expand Down Expand Up @@ -147,6 +151,8 @@ int main(int argc, char **argv) {
splashFile.close();
} else {
std::cout << " <<< Combine >>> " << std::endl;
// UPDATE THIS TO THE LATEST TAG WHENEVER RELEASED
std::cout << Form(" <<< %s >>>",combineTagString.c_str() ) << std::endl;
}

// now search for algo, and add option
Expand Down Expand Up @@ -180,15 +186,15 @@ int main(int argc, char **argv) {
}

if (seed == -1) {
if (verbose > 0) std::cout << ">>> Using OpenSSL to get a really random seed " << std::endl;
if (verbose > 0) std::cout << ">>> Using OpenSSL to get a truly random seed " << std::endl;
FILE *rpipe = popen("openssl rand 8", "r");
if (rpipe == 0) { std::cout << "Error when running 'openssl rand 8'" << std::endl; return 2101; }
if (fread(&seed, sizeof(int), 1, rpipe) != 1) {
std::cout << "Error when reading from 'openssl rand 8'" << std::endl; return 2102;
}
std::cout << ">>> Used OpenSSL to get a really random seed " << seed << std::endl;
std::cout << ">>> Used OpenSSL to get a truly random seed " << seed << std::endl;
} else {
std::cout << ">>> random number generator seed is " << seed << std::endl;
std::cout << ">>> Random number generator seed is " << seed << std::endl;
}
RooRandom::randomGenerator()->SetSeed(seed);

Expand Down Expand Up @@ -226,7 +232,7 @@ int main(int argc, char **argv) {
combiner.applyOptions(vm);
CascadeMinimizer::applyOptions(vm);
} catch (std::exception &ex) {
cerr << "Error when configuring the combiner:\n\t" << ex.what() << std::endl;
cerr << "Error when configuring combine:\n\t" << ex.what() << std::endl;
return 2001;
}

Expand All @@ -237,7 +243,7 @@ int main(int argc, char **argv) {
cerr << "Error when configuring the algorithm " << whichMethod << ":\n\t" << ex.what() << std::endl;
return 2002;
}
cout << ">>> method used is " << whichMethod << endl;
cout << ">>> Method used is " << whichMethod << endl;

if (!whichHintMethod.empty()) {
map<string, LimitAlgo *>::const_iterator it_hint = methods.find(whichHintMethod);
Expand All @@ -249,7 +255,7 @@ int main(int argc, char **argv) {
}
hintAlgo = it_hint->second;
hintAlgo->applyDefaultOptions();
cout << ">>> method used to hint where the upper limit is " << whichHintMethod << endl;
cout << ">>> Method used to hint where the upper limit is " << whichHintMethod << endl;
}

TString fileName = "higgsCombine" + name + "."+whichMethod+"."+massName+toyName+"root";
Expand Down
20 changes: 10 additions & 10 deletions contributing.md
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# Contributing

Contributions to combine of all sizes, from minor documentation updates to big code improvements, are welcome and encouraged.
Contributions to <span style="font-variant:small-caps;">Combine</span> of all sizes, from minor documentation updates to big code improvements, are welcome and encouraged.

To ensure good development of the tool, we try to coordinate contributions.
However, we are happy to help overcome any steps that may pose issues for contributors.
Expand Down Expand Up @@ -42,19 +42,19 @@ ensure `flake8` and `black` are installed:
and then from the main directory of this repository run


flake8:
`flake8`:
```
flake8 .
```

and black:
and `black`:

```
black -l 160 --check --diff .
```

If you'd like to see the details of the configuration `flake8` is using, check the `.flake8` file in the main directory.
The black linting uses the default [black style](https://black.readthedocs.io/en/stable/the_black_code_style/current_style.html) (for v23.3.0), with only the command line options shown above.
The `black` linting uses the default [black style](https://black.readthedocs.io/en/stable/the_black_code_style/current_style.html) (for v23.3.0), with only the command line options shown above.


## Updating Documentation
Expand All @@ -65,7 +65,7 @@ For that reason, whenever you make a change you should consider whether this req
If the change is user-facing it almost certainly does require a documentation update.

Documentation is **very important** to us.
Therefore, we will be picky and make sure it is done well!
Therefore, we will be meticulous and make sure it is done well!
However, we don't want to put extra burden on you, so we are happy to help and will make our own edits and updates to improve the documentation of your change.

We appreciate you putting in some effort and thought to ensure:
Expand All @@ -76,7 +76,7 @@ We appreciate you putting in some effort and thought to ensure:

### Technical details of the documentation

We use [mkdocs](www.mkdocs.org) to produce the static website that documents combine.
We use [mkdocs](www.mkdocs.org) to produce the static website that documents <span style="font-variant:small-caps;">Combine</span>.

The documentation files are all under the `docs/` folder.
Which pages get included in the site, and other configuration details are set in the `mkdocs.yml` file.
Expand All @@ -97,17 +97,17 @@ mkdocs serve

from the main repository directory. mkdocs will then print a link you can open to check the page generated in your browser.

**NOTE:** mkdocs builds which use internal links (or images etc) with absolute paths will work for local deployment, but will break when deployed to the public documentations pages.
Please ensure you use relative paths. Currently, this is the only known feature where the behvaiour differs between local mkdocs and public pages deployment.
**NOTE:** mkdocs builds that use internal links (or images, etc.) with absolute paths will work for local deployment, but will break when deployed to the public documentations pages.
Please ensure you use relative paths. Currently, this is the only known feature where the behvaiour differs between local mkdocs and public page deployment.
If you'd like to test the deployment directly, the suggested method is to set up a docs page using your personal github account; this should mimic the exact settings of the official page.

## Big Contributions

We welcome large contributions to combine.
We welcome large contributions to <span style="font-variant:small-caps;">Combine</span>.
Note, however, that we also follow long term planning, and there is a dedicated group stewarding the overall direction and development of the code.

This means that the code development should fit in with our long term vision;
if you have an idea for a big improvement or change it will be most efficient if you [contact us](mailto:[email protected]) first, in order to ensure that we can integrate it as seemlessly as possible into our plans.
if you have an idea for a big improvement or change it will be most efficient if you [contact us](mailto:[email protected]) first, in order to ensure that we can integrate it as seamlessly as possible into our plans.
This will simplify any potential conflicts when you make your pull request.

## Requested Contributions
Expand Down
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