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Collocated unified cov scheme#14

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yairchn wants to merge 147 commits intocmkaul:mastercmkaul/SCAMPy:masterfrom yairchn:collocated_unified_cov_schemeyairchn/SCAMPy:collocated_unified_cov_schemeCopy head branch name to clipboard

+1,748-1,348

Commits

Commits on Mar 19, 2018

• playing with buoyancy sorting

  

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  committed
  6465387

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Commits on Mar 22, 2018

• testing entrainment

  

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  c0b82db

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Commits on Mar 26, 2018

• playing with buoayncy sorting

  

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  committed
  062159d

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Commits on Mar 29, 2018

• testing entrainemnt

  

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  committed
  cdce551

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Commits on Apr 4, 2018

• merge with updstream/master that include covariances

  

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  committed
  c1e2221

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Commits on May 9, 2018

• fix dissipation terms in coavarinaces

  

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  committed
  3a8a686

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• fix dissipation terms in coavarinaces

  

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  committed
  db622aa

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Commits on May 11, 2018

• add Ellison mixing length

  

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  committed
  120a1b0

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Commits on May 19, 2018

• new miing length

  

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  a040cab

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Commits on May 24, 2018

• random process in entrainment

  

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  e8d8324

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Commits on Jun 5, 2018

• ..

  

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  2ce6507

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Commits on Jul 23, 2018

• first attempt

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  0b486d3

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Commits on Jul 27, 2018

• ..

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  44c0319

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Commits on Jul 30, 2018

• ..

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  d354841

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  5db9c9d

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Commits on Jul 31, 2018

• ..

  

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  1a23647

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  2859920

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Commits on Aug 5, 2018

• change a_full to a in decomposed env

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  886d607

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Commits on Aug 6, 2018

• .

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  3e94c35

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• .

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  5a94a1d

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• working

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  885ed9f

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• ..

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  1bf821c

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Commits on Aug 7, 2018

• with reverse integration, still issues

  

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  7e9fde6

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• ..

  

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  91529ce

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• fixing reversed entr

  

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  19846f7

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• working version

  

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  c045a76

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• working version

  

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  3a266e3

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• working for Tan2018 with w_bc from momentum equation

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  b82f354

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• :..:

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  9aa7aa7

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• working version cleeanup

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  de721cb

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Commits on Aug 8, 2018

• working

  

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  8409a74

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• cleanup

  

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  f5232ab

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• :..:

  

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  383e738

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Commits on Aug 9, 2018

• ..

  

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  committed
  aa89109

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Commits on Aug 10, 2018

• converting to unified functions

  

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  efc3d7c

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Commits on Aug 11, 2018

• compiling

  

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  5209881

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• compile with nogil added and checked factor 2 in TKE fuctions

  

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  2dd8a94

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• running version

  

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  fe81ae8

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• ..

  

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  7070e8f

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  c52dacd

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Commits on Aug 12, 2018

• ..

  

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  committed
  bd9390f

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• fix cov dissipation, bomex simualtions works

  

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  7582e82

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• cleanup of prints

  

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  5920fb2

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Commits on Aug 13, 2018

• merge with upstream/master

  

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  committed
  34b10b0

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• merge with upstream master

  

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  6d182f4

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• merge with upstream master

  

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  7bb783e

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• merge ..

  

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  76e7d11

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Commits on Aug 20, 2018

• ..

  

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  8fdc8bc

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• ..

  

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  c456da0

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Commits on Aug 22, 2018

• merge with upstream master - GITHUB

  

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  committed
  864553e

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Commits on Aug 23, 2018

• merge with upstream master + anna's changes to cov rain sources

  

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  5e09dce

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• ..

  

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  e6e9164

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• testing teh surface buoyancy calc

  

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  committed
  1ebf0a7

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Commits on Sep 2, 2018

• fix double eos calcualtion in ReferenceStates.pyx

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  8f205f0

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• ..

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  47bb1a3

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• set p at the surface to Pg in Ref

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  8466d00

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• ..

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  66100e5

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Commits on Sep 5, 2018

• fix values -> new in first level thermodynamic sa

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  779616e

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Commits on Sep 6, 2018

• adding quadrature based buoyancy_sorting

  

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  committed
  7785faa

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• adding quadrature buoyacy sorting - tested version

  

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  committed
  c8f291e

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Commits on Sep 7, 2018

• minor fixed for var_dissipiation writing

  

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  committed
  dca908a

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• ..

  

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  committed
  e25ee6b

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• fixing update_GMV_MF so that self.m is at full levels and the tendency is at half levels

  

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  committed
  5aa0034

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• fixing update_GMV_MF so that self.m is at full levels and the tendency is at half levels

  

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  committed
  caa09c2

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Commits on Sep 8, 2018

• cleanup of prints

  

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  committed
  63b5ef4

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• add conditios to calc tke and cov in stats_io prog TKE

  

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  7b753e8

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Commits on Sep 11, 2018

• set_bc for w and a

  

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  e7bea04

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Commits on Sep 12, 2018

• add if ws<0 flag in initialize_covariances

  

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  4c44be1

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• adding _f and _c for Ref profiles and adding function for calc the MF term for variances

  

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  committed
  941571c

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Commits on Sep 13, 2018

• ..

  

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  2a02d9e

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Commits on Sep 14, 2018

• change cov_massflux to interdomain

  

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  committed
  a5a743e

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• change cov_massflux to interdomain

  

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  committed
  ff0f03f

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• fix p_f and p_c in Surface bflux

  

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  committed
  3affa45

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Commits on Sep 17, 2018

• condition positive covariances only for TKE, Hvar and QTvar

  

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  5d6c8b8

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• condition positive covariances only for TKE, Hvar and QTvar

  

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  committed
  8d469de

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• fixing problems in calling update_covariance for HQTcov with GMV.H only

  

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  committed
  0775869

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Commits on Sep 18, 2018

• factor 0.5 for TKE in calcualtion form GMV

  

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  41eb484

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• add bounds for theal_qt_covar in covariance_update

  

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  10cbf58

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• add bounds for theal_qt_covar in covariance_update

  

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  8d80103

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• ..

  

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  523edba

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Commits on Sep 21, 2018

• checking for nans in Soares

  

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  61593a1

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• testing Soares cleanup needed

  

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  eecf8f1

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• testing for fake_collocated

  

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  8da0ce1

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Commits on Sep 22, 2018

• collocated that runs soares

  

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  committed
  edbb227

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• ..

  

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  c7e6c78

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• ..

  

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  c1ab2d2

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• calcualte w[gw] with the upwind function

  

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  c4b5df9

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• ..

  

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  f15daf5

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• ..

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  5fe8c24

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• ..

  

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  3e67532

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• merge with origin

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  c264295

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• adding the downward integration parts

  

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  ce3ca64

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• fully fake_collocated that integrates downwards on Soares

  

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  committed
  afe4012

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• add fabs in pressure terms

  

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  9ccaadb

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• ...

  

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  4b1349f

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• add sgn_w for entr and detr in a equation

  

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  14d57f3

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• ..

  

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  00e3c48

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• ..

  

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  committed
  0693446

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• fix factor 0.5 for tkr in get_GMV_tke and below it

  

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  committed
  a7d1747

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Commits on Sep 23, 2018

• ..

  

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  committed
  65e2775

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• fix _c in Turbulance.pyx

  

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• ..

  

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• ..

  

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  a9f757b

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• ..

  

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  1b9a025

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Commits on Sep 24, 2018

• turned collocated not running

  

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  committed
  94c20a0

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• turned collocated not running

  

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  462a597

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• ...

  

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  dc3b5db

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• ..

  

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  3b67403

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• add fabs in entr and detr on covarinaces

  

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  fcb1808

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• add fabs in entr and detr on covarinaces

  

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  b847a25

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• collocated works for Soares with clipping

  

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  0d3c514

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• ..

  

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  a295d06

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Commits on Sep 25, 2018

• unified upwind works for soares with clipping

  

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  1d4fc6f

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• . ..

  

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  497afba

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• ..

  

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  b47658d

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• ..

  

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  1f49bbf

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• fix min max for HQTcov

  

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  committed
  05d01eb

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• replace _half by _c and add _f

  

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  47dafa4

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• unified covariances running for Soares with clipping

  

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  committed
  1c11c24

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• cleanup

  

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  committed
  2325c33

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• ..:

  

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  d7991a1

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• ..

  

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  be6492e

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Commits on Sep 26, 2018

• working with Soares for downward integration

  

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  committed
  3c77f8a

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Commits on Sep 27, 2018

• ..

  

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  committed
  aa259bd

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• ..

  

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  0c69d9f

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• merge with new unified and running soares

  

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  committed
  025d123

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Commits on Sep 29, 2018

• adding DyCOMS and GABLS required functions from Ignacio's branch

  

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  294671d

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• changes in generate_namelist with new ml

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  5bf6da3

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• ..

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  26b6eab

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Commits on Sep 30, 2018

• temp fix for ml flag

  

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  committed
  3e025de

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• changing the flags of mixing scheme

  

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  58dfb81

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Commits on Oct 2, 2018

• tests

  

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  committed
  29c0329

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Commits on Oct 3, 2018

• cleanup

  

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  committed
  d827c6b

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• ..

  

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  committed
  70a1f6a

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Commits on Oct 4, 2018

• fixing issues with the sign of w[gw-1]

  

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  committed
  2155a77

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• ..

  

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  e92db56

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