add zenodo DOI for v5.11.0

clawpack · Aug 26, 2024 · d343071 · d343071
1 parent babaf2d
commit d343071
Show file tree

Hide file tree

Showing 1,065 changed files with 129 additions and 123 deletions.
diff --git a/_sources/about.rst.txt b/_sources/about.rst.txt
@@ -117,27 +117,28 @@ Citing this work
 If you use Clawpack in publications, please cite the software itself as
 well, with a citation similar to the following::
 
-    Clawpack Development Team (2024), Clawpack Version 5.10.0,
-    http://www.clawpack.org, doi: 10.5281/zenodo.10896214
+    Clawpack Development Team (2024), Clawpack Version 5.11.0,
+    http://www.clawpack.org, doi: 10.5281/zenodo.13376470
 
 Here's the bibtex::
 
     @misc{clawpack,
         title={Clawpack software}, 
         author={{Clawpack Development Team}}, 
         url={http://www.clawpack.org}, 
-        note={Version 5.10.0},
-        doi={https://doi.org/10.5281/zenodo.10896214},
+        note={Version 5.11.0},
+        doi={https://doi.org/10.5281/zenodo.13376470},
         year={2024}}
 
 Please fill in the version number that you used, and its year, with the
 appropriate DOI from `Zenodo <https://zenodo.org>`_, if available.  
 See :ref:`releases`.
 
 It is best to refer to the particular release used to obtain your results,
-but if you need to refer to multiple past releases, 
+As a general DOI, if you need to refer to multiple past releases, 
 or to cite Clawpack more generally, you can also use the DOI
-`10.17605/osf.io/kmw6h <https://doi.org/10.17605/osf.io/kmw6h>`__.
+`10.17605/osf.io/kmw6h <https://doi.org/10.17605/osf.io/kmw6h>`__,
+which links to a page with tar files for all recent releases.
 
 
 Also please cite the `recent article <https://peerj.com/articles/cs-68/>`_::

diff --git a/_sources/release_5_11_0.rst.txt b/_sources/release_5_11_0.rst.txt
@@ -8,7 +8,7 @@ v5.11.0 release notes
 
 Clawpack 5.11.0 was released on August 25, 2024. See :ref:`installing`.
 
-Permanent DOI: http://doi.org/10.5281/zenodo.XX
+Permanent DOI: http://doi.org/10.5281/zenodo.13376470
 
 
 Changes relative to Clawpack 5.10.0 (March 29, 2024) are shown below.

diff --git a/_sources/release_5_9_2.rst.txt b/_sources/release_5_9_2.rst.txt
@@ -8,7 +8,7 @@ v5.9.2 release notes
 
 Clawpack 5.9.2 was released on November 4, 2023. See :ref:`installing`.
 
-Permanent DOI: http://doi.org/10.5281/zenodo.XXX
+Permanent DOI: http://doi.org/10.5281/zenodo.10076317
 
 
 Changes relative to Clawpack 5.9.2 (October 2, 2023) are shown below.

diff --git a/_sources/releases.rst.txt b/_sources/releases.rst.txt
@@ -38,7 +38,7 @@ can also be referenced with the single DOI
 See :ref:`citing` for more information on how best to cite Clawpack.
 
 * :ref:`release_5_11_0`  -- August 25, 2024
-  `[DOI 10.5281/zenodo.XX] <https://doi.org/10.5281/zenodo.XX>`_
+  `[DOI 10.5281/zenodo.13376470] <https://doi.org/10.5281/zenodo.13376470>`_
 * :ref:`release_5_10_0`  -- March 29, 2024
   `[DOI 10.5281/zenodo.10896214] <https://doi.org/10.5281/zenodo.10896214>`_
 * :ref:`release_5_9_2`  -- November 4, 2023

diff --git a/about.html b/about.html
@@ -174,27 +174,28 @@ <h2>License<a class="headerlink" href="#license" title="Permalink to this headin
 <span id="citing"></span><h2>Citing this work<a class="headerlink" href="#citing-this-work" title="Permalink to this heading">¶</a></h2>
 <p>If you use Clawpack in publications, please cite the software itself as
 well, with a citation similar to the following:</p>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">Clawpack</span> <span class="n">Development</span> <span class="n">Team</span> <span class="p">(</span><span class="mi">2024</span><span class="p">),</span> <span class="n">Clawpack</span> <span class="n">Version</span> <span class="mf">5.10.0</span><span class="p">,</span>
-<span class="n">http</span><span class="p">:</span><span class="o">//</span><span class="n">www</span><span class="o">.</span><span class="n">clawpack</span><span class="o">.</span><span class="n">org</span><span class="p">,</span> <span class="n">doi</span><span class="p">:</span> <span class="mf">10.5281</span><span class="o">/</span><span class="n">zenodo</span><span class="mf">.10896214</span>
+<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">Clawpack</span> <span class="n">Development</span> <span class="n">Team</span> <span class="p">(</span><span class="mi">2024</span><span class="p">),</span> <span class="n">Clawpack</span> <span class="n">Version</span> <span class="mf">5.11.0</span><span class="p">,</span>
+<span class="n">http</span><span class="p">:</span><span class="o">//</span><span class="n">www</span><span class="o">.</span><span class="n">clawpack</span><span class="o">.</span><span class="n">org</span><span class="p">,</span> <span class="n">doi</span><span class="p">:</span> <span class="mf">10.5281</span><span class="o">/</span><span class="n">zenodo</span><span class="mf">.13376470</span>
 </pre></div>
 </div>
 <p>Here’s the bibtex:</p>
 <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="nd">@misc</span><span class="p">{</span><span class="n">clawpack</span><span class="p">,</span>
     <span class="n">title</span><span class="o">=</span><span class="p">{</span><span class="n">Clawpack</span> <span class="n">software</span><span class="p">},</span>
     <span class="n">author</span><span class="o">=</span><span class="p">{{</span><span class="n">Clawpack</span> <span class="n">Development</span> <span class="n">Team</span><span class="p">}},</span>
     <span class="n">url</span><span class="o">=</span><span class="p">{</span><span class="n">http</span><span class="p">:</span><span class="o">//</span><span class="n">www</span><span class="o">.</span><span class="n">clawpack</span><span class="o">.</span><span class="n">org</span><span class="p">},</span>
-    <span class="n">note</span><span class="o">=</span><span class="p">{</span><span class="n">Version</span> <span class="mf">5.10.0</span><span class="p">},</span>
-    <span class="n">doi</span><span class="o">=</span><span class="p">{</span><span class="n">https</span><span class="p">:</span><span class="o">//</span><span class="n">doi</span><span class="o">.</span><span class="n">org</span><span class="o">/</span><span class="mf">10.5281</span><span class="o">/</span><span class="n">zenodo</span><span class="mf">.10896214</span><span class="p">},</span>
+    <span class="n">note</span><span class="o">=</span><span class="p">{</span><span class="n">Version</span> <span class="mf">5.11.0</span><span class="p">},</span>
+    <span class="n">doi</span><span class="o">=</span><span class="p">{</span><span class="n">https</span><span class="p">:</span><span class="o">//</span><span class="n">doi</span><span class="o">.</span><span class="n">org</span><span class="o">/</span><span class="mf">10.5281</span><span class="o">/</span><span class="n">zenodo</span><span class="mf">.13376470</span><span class="p">},</span>
     <span class="n">year</span><span class="o">=</span><span class="p">{</span><span class="mi">2024</span><span class="p">}}</span>
 </pre></div>
 </div>
 <p>Please fill in the version number that you used, and its year, with the
 appropriate DOI from <a class="reference external" href="https://zenodo.org">Zenodo</a>, if available.
 See <a class="reference internal" href="releases.html#releases"><span class="std std-ref">Releases of Clawpack and release notes</span></a>.</p>
 <p>It is best to refer to the particular release used to obtain your results,
-but if you need to refer to multiple past releases,
+As a general DOI, if you need to refer to multiple past releases,
 or to cite Clawpack more generally, you can also use the DOI
-<a class="reference external" href="https://doi.org/10.17605/osf.io/kmw6h">10.17605/osf.io/kmw6h</a>.</p>
+<a class="reference external" href="https://doi.org/10.17605/osf.io/kmw6h">10.17605/osf.io/kmw6h</a>,
+which links to a page with tar files for all recent releases.</p>
 <p>Also please cite the <a class="reference external" href="https://peerj.com/articles/cs-68/">recent article</a>:</p>
 <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">Mandli</span><span class="p">,</span> <span class="n">K</span><span class="o">.</span><span class="n">T</span><span class="o">.</span><span class="p">,</span> <span class="n">Ahmadia</span><span class="p">,</span> <span class="n">A</span><span class="o">.</span><span class="n">J</span><span class="o">.</span><span class="p">,</span> <span class="n">Berger</span><span class="p">,</span> <span class="n">M</span><span class="o">.</span><span class="n">J</span><span class="o">.</span><span class="p">,</span> <span class="n">Calhoun</span><span class="p">,</span> <span class="n">D</span><span class="o">.</span><span class="n">A</span><span class="o">.</span><span class="p">,</span> <span class="n">George</span><span class="p">,</span> <span class="n">D</span><span class="o">.</span><span class="n">L</span><span class="o">.</span><span class="p">,</span>
 <span class="n">Hadjimichael</span><span class="p">,</span> <span class="n">Y</span><span class="o">.</span><span class="p">,</span> <span class="n">Ketcheson</span><span class="p">,</span> <span class="n">D</span><span class="o">.</span><span class="n">I</span><span class="o">.</span><span class="p">,</span> <span class="n">Lemoine</span><span class="p">,</span> <span class="n">G</span><span class="o">.</span><span class="n">I</span><span class="o">.</span><span class="p">,</span> <span class="n">LeVeque</span><span class="p">,</span> <span class="n">R</span><span class="o">.</span><span class="n">J</span><span class="o">.</span><span class="p">,</span> <span class="mf">2016.</span>

diff --git a/dev/.buildinfo b/dev/.buildinfo
@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: 729069e84c6b1d9a753a600ecc5af59a
+config: 7b250e1120e1610ba5a0da43d8115533
 tags: 645f666f9bcd5a90fca523b33c5a78b7
diff --git a/dev/.doctrees/ClawPlotAxes.doctree b/dev/.doctrees/ClawPlotAxes.doctree
diff --git a/dev/.doctrees/ClawPlotData.doctree b/dev/.doctrees/ClawPlotData.doctree
diff --git a/dev/.doctrees/ClawPlotFigure.doctree b/dev/.doctrees/ClawPlotFigure.doctree
diff --git a/dev/.doctrees/ClawPlotItem.doctree b/dev/.doctrees/ClawPlotItem.doctree
diff --git a/dev/.doctrees/about.doctree b/dev/.doctrees/about.doctree
diff --git a/dev/.doctrees/adjoint.doctree b/dev/.doctrees/adjoint.doctree
diff --git a/dev/.doctrees/amr_algorithm.doctree b/dev/.doctrees/amr_algorithm.doctree
diff --git a/dev/.doctrees/amrclaw.doctree b/dev/.doctrees/amrclaw.doctree
diff --git a/dev/.doctrees/amrclaw1d.doctree b/dev/.doctrees/amrclaw1d.doctree
diff --git a/dev/.doctrees/amrclaw_doxygen.doctree b/dev/.doctrees/amrclaw_doxygen.doctree
diff --git a/dev/.doctrees/amrclaw_flowcharts.doctree b/dev/.doctrees/amrclaw_flowcharts.doctree
diff --git a/dev/.doctrees/application_documentation.doctree b/dev/.doctrees/application_documentation.doctree
diff --git a/dev/.doctrees/apps.doctree b/dev/.doctrees/apps.doctree
diff --git a/dev/.doctrees/aws.doctree b/dev/.doctrees/aws.doctree
diff --git a/dev/.doctrees/b4run.doctree b/dev/.doctrees/b4run.doctree
diff --git a/dev/.doctrees/b4step_defaults.doctree b/dev/.doctrees/b4step_defaults.doctree
diff --git a/dev/.doctrees/bc.doctree b/dev/.doctrees/bc.doctree
diff --git a/dev/.doctrees/biblio.doctree b/dev/.doctrees/biblio.doctree
diff --git a/dev/.doctrees/bouss1d.doctree b/dev/.doctrees/bouss1d.doctree
diff --git a/dev/.doctrees/bouss2d.doctree b/dev/.doctrees/bouss2d.doctree
diff --git a/dev/.doctrees/changes_to_master.doctree b/dev/.doctrees/changes_to_master.doctree
diff --git a/dev/.doctrees/claw43to46.doctree b/dev/.doctrees/claw43to46.doctree
diff --git a/dev/.doctrees/claw46to50.doctree b/dev/.doctrees/claw46to50.doctree
diff --git a/dev/.doctrees/claw4x.doctree b/dev/.doctrees/claw4x.doctree
diff --git a/dev/.doctrees/clawpack5.doctree b/dev/.doctrees/clawpack5.doctree
diff --git a/dev/.doctrees/clawpack_components.doctree b/dev/.doctrees/clawpack_components.doctree
diff --git a/dev/.doctrees/community.doctree b/dev/.doctrees/community.doctree
diff --git a/dev/.doctrees/contents.doctree b/dev/.doctrees/contents.doctree
diff --git a/dev/.doctrees/contribute_apps.doctree b/dev/.doctrees/contribute_apps.doctree
diff --git a/dev/.doctrees/current_data.doctree b/dev/.doctrees/current_data.doctree
diff --git a/dev/.doctrees/developers.doctree b/dev/.doctrees/developers.doctree
diff --git a/dev/.doctrees/docker_image.doctree b/dev/.doctrees/docker_image.doctree
diff --git a/dev/.doctrees/dtopotools_module.doctree b/dev/.doctrees/dtopotools_module.doctree
diff --git a/dev/.doctrees/environment.pickle b/dev/.doctrees/environment.pickle
diff --git a/dev/.doctrees/f77_vs_f90.doctree b/dev/.doctrees/f77_vs_f90.doctree
diff --git a/dev/.doctrees/fgmax.doctree b/dev/.doctrees/fgmax.doctree
diff --git a/dev/.doctrees/fgmax_tools_module.doctree b/dev/.doctrees/fgmax_tools_module.doctree
diff --git a/dev/.doctrees/fgout.doctree b/dev/.doctrees/fgout.doctree
diff --git a/dev/.doctrees/fgout_tools_module.doctree b/dev/.doctrees/fgout_tools_module.doctree
diff --git a/dev/.doctrees/first_run.doctree b/dev/.doctrees/first_run.doctree
diff --git a/dev/.doctrees/first_run_fortran.doctree b/dev/.doctrees/first_run_fortran.doctree
diff --git a/dev/.doctrees/first_run_pyclaw.doctree b/dev/.doctrees/first_run_pyclaw.doctree
diff --git a/dev/.doctrees/flagregions.doctree b/dev/.doctrees/flagregions.doctree
diff --git a/dev/.doctrees/force_dry.doctree b/dev/.doctrees/force_dry.doctree
diff --git a/dev/.doctrees/fortran.doctree b/dev/.doctrees/fortran.doctree
diff --git a/dev/.doctrees/fortran_compilers.doctree b/dev/.doctrees/fortran_compilers.doctree
diff --git a/dev/.doctrees/fvmbook.doctree b/dev/.doctrees/fvmbook.doctree
diff --git a/dev/.doctrees/galleries.doctree b/dev/.doctrees/galleries.doctree
diff --git a/dev/.doctrees/gauges.doctree b/dev/.doctrees/gauges.doctree
diff --git a/dev/.doctrees/geoclaw.doctree b/dev/.doctrees/geoclaw.doctree
diff --git a/dev/.doctrees/geoclaw1d.doctree b/dev/.doctrees/geoclaw1d.doctree
diff --git a/dev/.doctrees/geoclaw_started.doctree b/dev/.doctrees/geoclaw_started.doctree
diff --git a/dev/.doctrees/geoclaw_util_module.doctree b/dev/.doctrees/geoclaw_util_module.doctree
diff --git a/dev/.doctrees/geohints.doctree b/dev/.doctrees/geohints.doctree
diff --git a/dev/.doctrees/geoplot.doctree b/dev/.doctrees/geoplot.doctree
diff --git a/dev/.doctrees/git_versions.doctree b/dev/.doctrees/git_versions.doctree
diff --git a/dev/.doctrees/googleearth_plotting.doctree b/dev/.doctrees/googleearth_plotting.doctree
diff --git a/dev/.doctrees/gpu.doctree b/dev/.doctrees/gpu.doctree
diff --git a/dev/.doctrees/grid_registration.doctree b/dev/.doctrees/grid_registration.doctree
diff --git a/dev/.doctrees/howto_doc.doctree b/dev/.doctrees/howto_doc.doctree
diff --git a/dev/.doctrees/howto_release.doctree b/dev/.doctrees/howto_release.doctree
diff --git a/dev/.doctrees/installing.doctree b/dev/.doctrees/installing.doctree
diff --git a/dev/.doctrees/installing_fortcodes.doctree b/dev/.doctrees/installing_fortcodes.doctree
diff --git a/dev/.doctrees/installing_pip.doctree b/dev/.doctrees/installing_pip.doctree
diff --git a/dev/.doctrees/kmltools_module.doctree b/dev/.doctrees/kmltools_module.doctree
diff --git a/dev/.doctrees/lagrangian_gauges.doctree b/dev/.doctrees/lagrangian_gauges.doctree
diff --git a/dev/.doctrees/license.doctree b/dev/.doctrees/license.doctree
diff --git a/dev/.doctrees/makefiles.doctree b/dev/.doctrees/makefiles.doctree
diff --git a/dev/.doctrees/makefiles_library.doctree b/dev/.doctrees/makefiles_library.doctree
diff --git a/dev/.doctrees/manning.doctree b/dev/.doctrees/manning.doctree
diff --git a/dev/.doctrees/mapc2p.doctree b/dev/.doctrees/mapc2p.doctree
diff --git a/dev/.doctrees/marching_front.doctree b/dev/.doctrees/marching_front.doctree
diff --git a/dev/.doctrees/matlab_plotting.doctree b/dev/.doctrees/matlab_plotting.doctree
diff --git a/dev/.doctrees/nearshore_interp.doctree b/dev/.doctrees/nearshore_interp.doctree
diff --git a/dev/.doctrees/netcdf.doctree b/dev/.doctrees/netcdf.doctree
diff --git a/dev/.doctrees/newapp.doctree b/dev/.doctrees/newapp.doctree
diff --git a/dev/.doctrees/okada.doctree b/dev/.doctrees/okada.doctree
diff --git a/dev/.doctrees/openmp.doctree b/dev/.doctrees/openmp.doctree
diff --git a/dev/.doctrees/output_styles.doctree b/dev/.doctrees/output_styles.doctree
diff --git a/dev/.doctrees/packages.doctree b/dev/.doctrees/packages.doctree
diff --git a/dev/.doctrees/pcolorcells.doctree b/dev/.doctrees/pcolorcells.doctree
diff --git a/dev/.doctrees/photos.doctree b/dev/.doctrees/photos.doctree
diff --git a/dev/.doctrees/plotexamples.doctree b/dev/.doctrees/plotexamples.doctree
diff --git a/dev/.doctrees/plotting.doctree b/dev/.doctrees/plotting.doctree
diff --git a/dev/.doctrees/plotting_faq.doctree b/dev/.doctrees/plotting_faq.doctree
diff --git a/dev/.doctrees/plotting_geoclaw.doctree b/dev/.doctrees/plotting_geoclaw.doctree
diff --git a/dev/.doctrees/plotting_python.doctree b/dev/.doctrees/plotting_python.doctree
diff --git a/dev/.doctrees/plottools_module.doctree b/dev/.doctrees/plottools_module.doctree
diff --git a/dev/.doctrees/prereqs.doctree b/dev/.doctrees/prereqs.doctree
diff --git a/dev/.doctrees/pyclaw/about.doctree b/dev/.doctrees/pyclaw/about.doctree
diff --git a/dev/.doctrees/pyclaw/basics.doctree b/dev/.doctrees/pyclaw/basics.doctree
diff --git a/dev/.doctrees/pyclaw/classes.doctree b/dev/.doctrees/pyclaw/classes.doctree
diff --git a/dev/.doctrees/pyclaw/clawpack_and_pyclaw.doctree b/dev/.doctrees/pyclaw/clawpack_and_pyclaw.doctree
diff --git a/dev/.doctrees/pyclaw/cloud.doctree b/dev/.doctrees/pyclaw/cloud.doctree
diff --git a/dev/.doctrees/pyclaw/controller.doctree b/dev/.doctrees/pyclaw/controller.doctree
diff --git a/dev/.doctrees/pyclaw/evolve/limiters.doctree b/dev/.doctrees/pyclaw/evolve/limiters.doctree
diff --git a/dev/.doctrees/pyclaw/examples.doctree b/dev/.doctrees/pyclaw/examples.doctree
diff --git a/dev/.doctrees/pyclaw/geometry.doctree b/dev/.doctrees/pyclaw/geometry.doctree
diff --git a/dev/.doctrees/pyclaw/going_further.doctree b/dev/.doctrees/pyclaw/going_further.doctree
diff --git a/dev/.doctrees/pyclaw/index.doctree b/dev/.doctrees/pyclaw/index.doctree
diff --git a/dev/.doctrees/pyclaw/io.doctree b/dev/.doctrees/pyclaw/io.doctree
diff --git a/dev/.doctrees/pyclaw/output.doctree b/dev/.doctrees/pyclaw/output.doctree
diff --git a/dev/.doctrees/pyclaw/parallel.doctree b/dev/.doctrees/pyclaw/parallel.doctree
diff --git a/dev/.doctrees/pyclaw/plotting.doctree b/dev/.doctrees/pyclaw/plotting.doctree
diff --git a/dev/.doctrees/pyclaw/problem.doctree b/dev/.doctrees/pyclaw/problem.doctree
diff --git a/dev/.doctrees/pyclaw/rp.doctree b/dev/.doctrees/pyclaw/rp.doctree
diff --git a/dev/.doctrees/pyclaw/solution.doctree b/dev/.doctrees/pyclaw/solution.doctree
diff --git a/dev/.doctrees/pyclaw/solvers.doctree b/dev/.doctrees/pyclaw/solvers.doctree
diff --git a/dev/.doctrees/pyclaw/started.doctree b/dev/.doctrees/pyclaw/started.doctree
diff --git a/dev/.doctrees/pyclaw/state.doctree b/dev/.doctrees/pyclaw/state.doctree
diff --git a/dev/.doctrees/pyclaw/troubleshooting.doctree b/dev/.doctrees/pyclaw/troubleshooting.doctree
diff --git a/dev/.doctrees/pyclaw/tutorial.doctree b/dev/.doctrees/pyclaw/tutorial.doctree
diff --git a/dev/.doctrees/pyclaw/util.doctree b/dev/.doctrees/pyclaw/util.doctree
diff --git a/dev/.doctrees/python.doctree b/dev/.doctrees/python.doctree
diff --git a/dev/.doctrees/python_path.doctree b/dev/.doctrees/python_path.doctree
diff --git a/dev/.doctrees/qinit_defaults.doctree b/dev/.doctrees/qinit_defaults.doctree
diff --git a/dev/.doctrees/quick_surge.doctree b/dev/.doctrees/quick_surge.doctree
diff --git a/dev/.doctrees/quick_tsunami.doctree b/dev/.doctrees/quick_tsunami.doctree
diff --git a/dev/.doctrees/refinement.doctree b/dev/.doctrees/refinement.doctree
diff --git a/dev/.doctrees/regression.doctree b/dev/.doctrees/regression.doctree
diff --git a/dev/.doctrees/release_5_0_0.doctree b/dev/.doctrees/release_5_0_0.doctree
diff --git a/dev/.doctrees/release_5_10_0.doctree b/dev/.doctrees/release_5_10_0.doctree
diff --git a/dev/.doctrees/release_5_11_0.doctree b/dev/.doctrees/release_5_11_0.doctree
diff --git a/dev/.doctrees/release_5_1_0.doctree b/dev/.doctrees/release_5_1_0.doctree
diff --git a/dev/.doctrees/release_5_2_0.doctree b/dev/.doctrees/release_5_2_0.doctree
diff --git a/dev/.doctrees/release_5_2_1.doctree b/dev/.doctrees/release_5_2_1.doctree
diff --git a/dev/.doctrees/release_5_2_2.doctree b/dev/.doctrees/release_5_2_2.doctree
diff --git a/dev/.doctrees/release_5_3_0.doctree b/dev/.doctrees/release_5_3_0.doctree
diff --git a/dev/.doctrees/release_5_3_1.doctree b/dev/.doctrees/release_5_3_1.doctree
diff --git a/dev/.doctrees/release_5_4_0.doctree b/dev/.doctrees/release_5_4_0.doctree
diff --git a/dev/.doctrees/release_5_4_1.doctree b/dev/.doctrees/release_5_4_1.doctree
diff --git a/dev/.doctrees/release_5_5_0.doctree b/dev/.doctrees/release_5_5_0.doctree
diff --git a/dev/.doctrees/release_5_6_0.doctree b/dev/.doctrees/release_5_6_0.doctree
diff --git a/dev/.doctrees/release_5_6_1.doctree b/dev/.doctrees/release_5_6_1.doctree
diff --git a/dev/.doctrees/release_5_7_0.doctree b/dev/.doctrees/release_5_7_0.doctree
diff --git a/dev/.doctrees/release_5_7_1.doctree b/dev/.doctrees/release_5_7_1.doctree
diff --git a/dev/.doctrees/release_5_8_0.doctree b/dev/.doctrees/release_5_8_0.doctree
diff --git a/dev/.doctrees/release_5_8_1.doctree b/dev/.doctrees/release_5_8_1.doctree
diff --git a/dev/.doctrees/release_5_8_2.doctree b/dev/.doctrees/release_5_8_2.doctree
diff --git a/dev/.doctrees/release_5_9_0.doctree b/dev/.doctrees/release_5_9_0.doctree
diff --git a/dev/.doctrees/release_5_9_1.doctree b/dev/.doctrees/release_5_9_1.doctree
diff --git a/dev/.doctrees/release_5_9_2.doctree b/dev/.doctrees/release_5_9_2.doctree
diff --git a/dev/.doctrees/releases.doctree b/dev/.doctrees/releases.doctree
diff --git a/dev/.doctrees/restart.doctree b/dev/.doctrees/restart.doctree
diff --git a/dev/.doctrees/riemann.doctree b/dev/.doctrees/riemann.doctree
diff --git a/dev/.doctrees/riemann/Shallow_water_Riemann_solvers.doctree b/dev/.doctrees/riemann/Shallow_water_Riemann_solvers.doctree
diff --git a/dev/.doctrees/ruled_rectangles.doctree b/dev/.doctrees/ruled_rectangles.doctree
diff --git a/dev/.doctrees/sealevel.doctree b/dev/.doctrees/sealevel.doctree
diff --git a/dev/.doctrees/set_eta_init.doctree b/dev/.doctrees/set_eta_init.doctree
diff --git a/dev/.doctrees/setaux_defaults.doctree b/dev/.doctrees/setaux_defaults.doctree
diff --git a/dev/.doctrees/setenv.doctree b/dev/.doctrees/setenv.doctree
diff --git a/dev/.doctrees/setplot.doctree b/dev/.doctrees/setplot.doctree
diff --git a/dev/.doctrees/setrun.doctree b/dev/.doctrees/setrun.doctree
diff --git a/dev/.doctrees/setrun_amrclaw.doctree b/dev/.doctrees/setrun_amrclaw.doctree
diff --git a/dev/.doctrees/setrun_amrclaw_sample.doctree b/dev/.doctrees/setrun_amrclaw_sample.doctree
diff --git a/dev/.doctrees/setrun_geoclaw.doctree b/dev/.doctrees/setrun_geoclaw.doctree
diff --git a/dev/.doctrees/setrun_sample.doctree b/dev/.doctrees/setrun_sample.doctree
diff --git a/dev/.doctrees/sharing.doctree b/dev/.doctrees/sharing.doctree
diff --git a/dev/.doctrees/sphere_source.doctree b/dev/.doctrees/sphere_source.doctree
diff --git a/dev/.doctrees/sphinxdoc.doctree b/dev/.doctrees/sphinxdoc.doctree
diff --git a/dev/.doctrees/src1d_defaults.doctree b/dev/.doctrees/src1d_defaults.doctree
diff --git a/dev/.doctrees/src_defaults.doctree b/dev/.doctrees/src_defaults.doctree
diff --git a/dev/.doctrees/storm_module.doctree b/dev/.doctrees/storm_module.doctree
diff --git a/dev/.doctrees/surgedata.doctree b/dev/.doctrees/surgedata.doctree
diff --git a/dev/.doctrees/testing.doctree b/dev/.doctrees/testing.doctree
diff --git a/dev/.doctrees/timing.doctree b/dev/.doctrees/timing.doctree
diff --git a/dev/.doctrees/topo.doctree b/dev/.doctrees/topo.doctree
diff --git a/dev/.doctrees/topotools.doctree b/dev/.doctrees/topotools.doctree
diff --git a/dev/.doctrees/topotools_module.doctree b/dev/.doctrees/topotools_module.doctree
diff --git a/dev/.doctrees/trouble.doctree b/dev/.doctrees/trouble.doctree
diff --git a/dev/.doctrees/tsunamidata.doctree b/dev/.doctrees/tsunamidata.doctree
diff --git a/dev/.doctrees/user_routines.doctree b/dev/.doctrees/user_routines.doctree
diff --git a/dev/.doctrees/visit_plotting.doctree b/dev/.doctrees/visit_plotting.doctree
diff --git a/dev/.doctrees/vm.doctree b/dev/.doctrees/vm.doctree
diff --git a/dev/.doctrees/wp_algorithms.doctree b/dev/.doctrees/wp_algorithms.doctree
diff --git a/dev/_sources/about.rst.txt b/dev/_sources/about.rst.txt
@@ -117,27 +117,28 @@ Citing this work
 If you use Clawpack in publications, please cite the software itself as
 well, with a citation similar to the following::
 
-    Clawpack Development Team (2024), Clawpack Version 5.10.0,
-    http://www.clawpack.org, doi: 10.5281/zenodo.10896214
+    Clawpack Development Team (2024), Clawpack Version 5.11.0,
+    http://www.clawpack.org, doi: 10.5281/zenodo.13376470
 
 Here's the bibtex::
 
     @misc{clawpack,
         title={Clawpack software}, 
         author={{Clawpack Development Team}}, 
         url={http://www.clawpack.org}, 
-        note={Version 5.10.0},
-        doi={https://doi.org/10.5281/zenodo.10896214},
+        note={Version 5.11.0},
+        doi={https://doi.org/10.5281/zenodo.13376470},
         year={2024}}
 
 Please fill in the version number that you used, and its year, with the
 appropriate DOI from `Zenodo <https://zenodo.org>`_, if available.  
 See :ref:`releases`.
 
 It is best to refer to the particular release used to obtain your results,
-but if you need to refer to multiple past releases, 
+As a general DOI, if you need to refer to multiple past releases, 
 or to cite Clawpack more generally, you can also use the DOI
-`10.17605/osf.io/kmw6h <https://doi.org/10.17605/osf.io/kmw6h>`__.
+`10.17605/osf.io/kmw6h <https://doi.org/10.17605/osf.io/kmw6h>`__,
+which links to a page with tar files for all recent releases.
 
 
 Also please cite the `recent article <https://peerj.com/articles/cs-68/>`_::

diff --git a/dev/_sources/changes_to_master.rst.txt b/dev/_sources/changes_to_master.rst.txt
@@ -3,12 +3,12 @@
 .. _changes_to_master:
 
 ===============================
-Changes to master since v5.10.0
+Changes to master since v5.11.0
 ===============================
 
 
 Follow the links to see changes that have been made to the master branch of
-each repository since the last release (v5.10.0) on March 29, 2024.
+each repository since the last release (v5.11.0) on August 25, 2024.
 
 These changes should appear in the next release.  If you need them now,
 see :ref:`developers` for instructions on cloning and installing from the
@@ -31,48 +31,48 @@ Changes to classic
 
 
 See `classic diffs
-<https://github.com/clawpack/classic/compare/v5.10.0...master>`_
+<https://github.com/clawpack/classic/compare/v5.11.0...master>`_
 
 Changes to clawutil
 -------------------
 
 
 See `clawutil diffs
-<https://github.com/clawpack/clawutil/compare/v5.10.0...master>`_
+<https://github.com/clawpack/clawutil/compare/v5.11.0...master>`_
 
 Changes to visclaw
 ------------------
 
 
 See `visclaw diffs
-<https://github.com/clawpack/visclaw/compare/v5.10.0...master>`_
+<https://github.com/clawpack/visclaw/compare/v5.11.0...master>`_
 
 Changes to riemann
 ------------------
 
 
 See `riemann diffs
-<https://github.com/clawpack/riemann/compare/v5.10.0...master>`_
+<https://github.com/clawpack/riemann/compare/v5.11.0...master>`_
 
 Changes to amrclaw
 ------------------
 
 
 See `amrclaw diffs
-<https://github.com/clawpack/amrclaw/compare/v5.10.0...master>`_
+<https://github.com/clawpack/amrclaw/compare/v5.11.0...master>`_
 
 Changes to geoclaw
 ------------------
 
 
-See `geoclaw diffs <https://github.com/clawpack/geoclaw/compare/v5.10.0...master>`_
+See `geoclaw diffs <https://github.com/clawpack/geoclaw/compare/v5.11.0...master>`_
 
 
 Changes to PyClaw
 ------------------
 
 
-See `pyclaw diffs <https://github.com/clawpack/pyclaw/compare/v5.10.0...master>`_
+See `pyclaw diffs <https://github.com/clawpack/pyclaw/compare/v5.11.0...master>`_
 
 ===========================
 Other Clawpack Repositories
@@ -82,10 +82,10 @@ The repositories below are not included in the Clawpack tarfile or pip
 install, but changes to these repositories may also be of interest.
 
 - `apps diffs
-  <https://github.com/clawpack/apps/compare/v5.10.0...master>`_
+  <https://github.com/clawpack/apps/compare/v5.11.0...master>`_
 
 - `doc diffs
-  <https://github.com/clawpack/doc/compare/v5.9.x...dev>`_
+  <https://github.com/clawpack/doc/compare/v5.11.x...dev>`_
 
 - `docker-files diffs
-  <https://github.com/clawpack/docker-files/compare/v5.10.0...master>`_
+  <https://github.com/clawpack/docker-files/compare/v5.11.0...master>`_
diff --git a/dev/_sources/installing_fortcodes.rst.txt b/dev/_sources/installing_fortcodes.rst.txt
@@ -36,9 +36,9 @@ Download a tar file from one of these sources:
 
 After downloading a tar file you can do, e.g. ::
 
-    tar -xzf clawpack-v5.10.0.tar.gz
-    cd clawpack-v5.10.0
-    export CLAW=/full/path/to/clawpack-v5.10.0  # in bash
+    tar -xzf clawpack-v5.11.0.tar.gz
+    cd clawpack-v5.11.0
+    export CLAW=/full/path/to/clawpack-v5.11.0  # in bash
     
 The last command sets an environment variable when using the bash shell.
 The syntax may be different in other shells.  Replace `/full/path/to`
@@ -60,7 +60,7 @@ See :ref:`developers` for more details, but the basic commands are::
 
     git clone https://github.com/clawpack/clawpack.git
     cd clawpack
-    git checkout v5.10.0     # or an older version; `git tag -l` to list options
+    git checkout v5.11.0     # or an older version; `git tag -l` to list options
     git submodule init      # for repositories pyclaw, clawutil, visclaw, etc.
     git submodule update    # clones all the submodule repositories
     export CLAW=/full/path/to/clawpack    # in bash

diff --git a/dev/_sources/installing_pip.rst.txt b/dev/_sources/installing_pip.rst.txt
@@ -32,7 +32,7 @@ Clawpack is via::
 
 or, more specifically, ::
 
-    pip install --user clawpack==v5.10.0
+    pip install --user clawpack==v5.11.0
 
 or you can choose a previous version from the `PyPi history <https://pypi.org/project/clawpack/#history>`__.
 
@@ -56,7 +56,7 @@ following command
 want to change anything in this command)**::  
 
     pip install --src=$HOME/clawpack_src --user --no-build-isolation -e \
-        git+https://github.com/clawpack/clawpack.git@v5.10.0#egg=clawpack
+        git+https://github.com/clawpack/clawpack.git@v5.11.0#egg=clawpack
 
 
 **Notes:** 
@@ -71,7 +71,7 @@ want to change anything in this command)**::
   :ref:`installing_options` if you want more control.
 
 - This will download Clawpack (via a git clone) into the directory
-  `$HOME/clawpack_src/clawpack-v5.10.0`.  The top 
+  `$HOME/clawpack_src/clawpack-v5.11.0`.  The top 
   installation directory can be changed by modifying the ``--src`` target 
   (or omit this part to put it in your current working directory).
   If you have already downloaded Clawpack via a different mechanism then
@@ -92,11 +92,11 @@ want to change anything in this command)**::
 
 - In order to use the Fortran codes within Clawpack (`classic`,
   `amrclaw`, or `geoclaw`), you should then set the environment
-  variable `CLAW` to point to the `clawpack-v5.10.0` directory within
+  variable `CLAW` to point to the `clawpack-v5.11.0` directory within
   the installation directory `$HOME/clawpack_src`, and `FC` to point
   to the desired Fortran compiler, e.g. in the bash shell::
   
-        export CLAW=$HOME/clawpack_src/clawpack-v5.10.0
+        export CLAW=$HOME/clawpack_src/clawpack-v5.11.0
         export FC=gfortran
 
 

diff --git a/dev/_sources/release_5_11_0.rst.txt b/dev/_sources/release_5_11_0.rst.txt
@@ -8,7 +8,7 @@ v5.11.0 release notes
 
 Clawpack 5.11.0 was released on August 25, 2024. See :ref:`installing`.
 
-Permanent DOI: http://doi.org/10.5281/zenodo.XX
+Permanent DOI: http://doi.org/10.5281/zenodo.13376470
 
 
 Changes relative to Clawpack 5.10.0 (March 29, 2024) are shown below.

diff --git a/dev/_sources/release_5_9_2.rst.txt b/dev/_sources/release_5_9_2.rst.txt
@@ -8,7 +8,7 @@ v5.9.2 release notes
 
 Clawpack 5.9.2 was released on November 4, 2023. See :ref:`installing`.
 
-Permanent DOI: http://doi.org/10.5281/zenodo.XXX
+Permanent DOI: http://doi.org/10.5281/zenodo.10076317
 
 
 Changes relative to Clawpack 5.9.2 (October 2, 2023) are shown below.

diff --git a/dev/_sources/releases.rst.txt b/dev/_sources/releases.rst.txt
@@ -38,7 +38,7 @@ can also be referenced with the single DOI
 See :ref:`citing` for more information on how best to cite Clawpack.
 
 * :ref:`release_5_11_0`  -- August 25, 2024
-  `[DOI 10.5281/zenodo.XX] <https://doi.org/10.5281/zenodo.XX>`_
+  `[DOI 10.5281/zenodo.13376470] <https://doi.org/10.5281/zenodo.13376470>`_
 * :ref:`release_5_10_0`  -- March 29, 2024
   `[DOI 10.5281/zenodo.10896214] <https://doi.org/10.5281/zenodo.10896214>`_
 * :ref:`release_5_9_2`  -- November 4, 2023