fix fvmbook links

clawpack · Dec 26, 2023 · 18be577 · 18be577
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diff --git a/_sources/biblio.rst.txt b/_sources/biblio.rst.txt
@@ -147,15 +147,15 @@ Papers describing the Clawpack software and algorithms
 
 .. [LeVeque-FVMHP] 
    R. J. LeVeque.  
-   `Finite Volume Methods for Hyperbolic Problems. <http://www.amath.washington.edu/~claw/book.html>`_
+   `Finite Volume Methods for Hyperbolic Problems. <https://www.clawpack.org/fvmhp_materials/>`_
    Cambridge University Press, Cambridge, UK, 2002. ::
 
         @book{LeVeque-FVMHP,
             Author = {R. J. LeVeque},
             Title = {Finite Volume Methods for Hyperbolic Problems},
             Publisher = {Cambridge University Press},
             Year = {2002},
-            Url = {http://www.clawpack.org/book.html}}
+            Url = {https://www.clawpack.org/fvmhp_materials/}}
 
    See :ref:`gallery_fvmbook` for some sample results from this book.
 

diff --git a/_sources/fvmbook.rst.txt b/_sources/fvmbook.rst.txt
@@ -7,27 +7,39 @@ Examples from the book FVMHP
 
 
 
-The book 
-`Finite Volume Methods for Hyperbolic Problems
-<http://faculty.washington.edu/rjl/book.html>`_  
+The book `Finite Volume Methods for Hyperbolic Problems
+<https://www.clawpack.org/fvmhp_materials/>`_  
 contains many examples that link to Clawpack codes used to create the
-figures in the book.  These codes are  available for Clawpack
-4.3 via the 
-`book webpage <http://faculty.washington.edu/rjl/book.html>`_  
+figures in the book.  These codes were originally developed for Clawpack
+4.3 and these versions are still available from 
+`this webpage <https://depts.washington.edu/clawpack/clawpack-4.3/book.html>`_,
+but they will only run with Clawpack 4.3, which has not been developed since
+2006.
 
-Some of have been converted to Clawpack 5.x form, with a `setrun.py`
-file for setting run time data and a `setplot.py` file for specifying plots
-with Python.  See:
+Many of the examples have been converted to Clawpack 5.x form, with
+a `setrun.py` file for setting run time data and a `setplot.py`
+file for specifying plots with Python.  See:
 
  * :ref:`setrun`
  * :ref:`setplot`
 
 Available examples 
 ------------------
 
-The examples converted so far can be found in the 
+The examples converted to v5.x form so far can be found in the 
 directory `apps/fvmbook` if you clone the `apps` repository.
 (See :ref:`apps`.)
 
 You can also browse the examples and plots/animations of the results in the
 `Clawpack gallery of fvmbook applications <http://www.clawpack.org/gallery/gallery/gallery_fvmbook.html>`__
+
+YouTube Videos
+--------------
+
+A set of 25 videos on material from the book were recorded in 2023 and are
+available in `this playlist
+<https://www.youtube.com/playlist?list=PLHJVj2zE9oLRPo7Xn1QI6WTl9QrBXLkqS>`__
+on the `Clawpack YouTube channel
+<https://www.youtube.com/channel/UCxIdwWtDvUG_kdn-KiSVroQ>`__.
+For a summary of the contents of each video, see `this webpage
+<https://faculty.washington.edu/rjl/classes/am574w2023/lectures.html>`__.
diff --git a/_sources/galleries.rst.txt b/_sources/galleries.rst.txt
@@ -23,9 +23,12 @@ and also from
 
 which must be obtained separately from the main installation of Clawpack,
 see :ref:`apps`.
+
 The directory `$CLAW/apps/notebooks` contains a number of Jupyter
 notebooks that illustrate various aspects of Clawpack.  
 Many of these are also visible in rendered html form in the 
 `Gallery of Notebooks <http://www.clawpack.org/gallery/notebooks.html>`__.
 
+The directory `$CLAW/apps/fvmbook` contains a number of 
+:ref:`fvmbook`.
 
diff --git a/biblio.html b/biblio.html
@@ -232,14 +232,14 @@ <h2>Papers describing the Clawpack software and algorithms<a class="headerlink"
 <div class="citation" id="leveque-fvmhp" role="doc-biblioentry">
 <span class="label"><span class="fn-bracket">[</span>LeVeque-FVMHP<span class="fn-bracket">]</span></span>
 <p>R. J. LeVeque.
-<a class="reference external" href="http://www.amath.washington.edu/~claw/book.html">Finite Volume Methods for Hyperbolic Problems.</a>
+<a class="reference external" href="https://www.clawpack.org/fvmhp_materials/">Finite Volume Methods for Hyperbolic Problems.</a>
 Cambridge University Press, Cambridge, UK, 2002.</p>
 <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="nd">@book</span><span class="p">{</span><span class="n">LeVeque</span><span class="o">-</span><span class="n">FVMHP</span><span class="p">,</span>
     <span class="n">Author</span> <span class="o">=</span> <span class="p">{</span><span class="n">R</span><span class="o">.</span> <span class="n">J</span><span class="o">.</span> <span class="n">LeVeque</span><span class="p">},</span>
     <span class="n">Title</span> <span class="o">=</span> <span class="p">{</span><span class="n">Finite</span> <span class="n">Volume</span> <span class="n">Methods</span> <span class="k">for</span> <span class="n">Hyperbolic</span> <span class="n">Problems</span><span class="p">},</span>
     <span class="n">Publisher</span> <span class="o">=</span> <span class="p">{</span><span class="n">Cambridge</span> <span class="n">University</span> <span class="n">Press</span><span class="p">},</span>
     <span class="n">Year</span> <span class="o">=</span> <span class="p">{</span><span class="mi">2002</span><span class="p">},</span>
-    <span class="n">Url</span> <span class="o">=</span> <span class="p">{</span><span class="n">http</span><span class="p">:</span><span class="o">//</span><span class="n">www</span><span class="o">.</span><span class="n">clawpack</span><span class="o">.</span><span class="n">org</span><span class="o">/</span><span class="n">book</span><span class="o">.</span><span class="n">html</span><span class="p">}}</span>
+    <span class="n">Url</span> <span class="o">=</span> <span class="p">{</span><span class="n">https</span><span class="p">:</span><span class="o">//</span><span class="n">www</span><span class="o">.</span><span class="n">clawpack</span><span class="o">.</span><span class="n">org</span><span class="o">/</span><span class="n">fvmhp_materials</span><span class="o">/</span><span class="p">}}</span>
 </pre></div>
 </div>
 <p>See <span class="xref std std-ref">gallery_fvmbook</span> for some sample results from this book.</p>

diff --git a/dev/.buildinfo b/dev/.buildinfo
@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: 887f5e2c54ba2b2569b493a65a6f8422
+config: 515136ac7c664c57966fe826a8cd192d
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diff --git a/dev/_sources/biblio.rst.txt b/dev/_sources/biblio.rst.txt
@@ -147,15 +147,15 @@ Papers describing the Clawpack software and algorithms
 
 .. [LeVeque-FVMHP] 
    R. J. LeVeque.  
-   `Finite Volume Methods for Hyperbolic Problems. <http://www.amath.washington.edu/~claw/book.html>`_
+   `Finite Volume Methods for Hyperbolic Problems. <https://www.clawpack.org/fvmhp_materials/>`_
    Cambridge University Press, Cambridge, UK, 2002. ::
 
         @book{LeVeque-FVMHP,
             Author = {R. J. LeVeque},
             Title = {Finite Volume Methods for Hyperbolic Problems},
             Publisher = {Cambridge University Press},
             Year = {2002},
-            Url = {http://www.clawpack.org/book.html}}
+            Url = {https://www.clawpack.org/fvmhp_materials/}}
 
    See :ref:`gallery_fvmbook` for some sample results from this book.
 

diff --git a/dev/_sources/fvmbook.rst.txt b/dev/_sources/fvmbook.rst.txt
@@ -7,27 +7,39 @@ Examples from the book FVMHP
 
 
 
-The book 
-`Finite Volume Methods for Hyperbolic Problems
-<http://faculty.washington.edu/rjl/book.html>`_  
+The book `Finite Volume Methods for Hyperbolic Problems
+<https://www.clawpack.org/fvmhp_materials/>`_  
 contains many examples that link to Clawpack codes used to create the
-figures in the book.  These codes are  available for Clawpack
-4.3 via the 
-`book webpage <http://faculty.washington.edu/rjl/book.html>`_  
+figures in the book.  These codes were originally developed for Clawpack
+4.3 and these versions are still available from 
+`this webpage <https://depts.washington.edu/clawpack/clawpack-4.3/book.html>`_,
+but they will only run with Clawpack 4.3, which has not been developed since
+2006.
 
-Some of have been converted to Clawpack 5.x form, with a `setrun.py`
-file for setting run time data and a `setplot.py` file for specifying plots
-with Python.  See:
+Many of the examples have been converted to Clawpack 5.x form, with
+a `setrun.py` file for setting run time data and a `setplot.py`
+file for specifying plots with Python.  See:
 
  * :ref:`setrun`
  * :ref:`setplot`
 
 Available examples 
 ------------------
 
-The examples converted so far can be found in the 
+The examples converted to v5.x form so far can be found in the 
 directory `apps/fvmbook` if you clone the `apps` repository.
 (See :ref:`apps`.)
 
 You can also browse the examples and plots/animations of the results in the
 `Clawpack gallery of fvmbook applications <http://www.clawpack.org/gallery/gallery/gallery_fvmbook.html>`__
+
+YouTube Videos
+--------------
+
+A set of 25 videos on material from the book were recorded in 2023 and are
+available in `this playlist
+<https://www.youtube.com/playlist?list=PLHJVj2zE9oLRPo7Xn1QI6WTl9QrBXLkqS>`__
+on the `Clawpack YouTube channel
+<https://www.youtube.com/channel/UCxIdwWtDvUG_kdn-KiSVroQ>`__.
+For a summary of the contents of each video, see `this webpage
+<https://faculty.washington.edu/rjl/classes/am574w2023/lectures.html>`__.
diff --git a/dev/_sources/galleries.rst.txt b/dev/_sources/galleries.rst.txt
@@ -23,9 +23,12 @@ and also from
 
 which must be obtained separately from the main installation of Clawpack,
 see :ref:`apps`.
+
 The directory `$CLAW/apps/notebooks` contains a number of Jupyter
 notebooks that illustrate various aspects of Clawpack.  
 Many of these are also visible in rendered html form in the 
 `Gallery of Notebooks <http://www.clawpack.org/gallery/notebooks.html>`__.
 
+The directory `$CLAW/apps/fvmbook` contains a number of 
+:ref:`fvmbook`.
 
diff --git a/dev/biblio.html b/dev/biblio.html
@@ -232,14 +232,14 @@ <h2>Papers describing the Clawpack software and algorithms<a class="headerlink"
 <div class="citation" id="leveque-fvmhp" role="doc-biblioentry">
 <span class="label"><span class="fn-bracket">[</span>LeVeque-FVMHP<span class="fn-bracket">]</span></span>
 <p>R. J. LeVeque.
-<a class="reference external" href="http://www.amath.washington.edu/~claw/book.html">Finite Volume Methods for Hyperbolic Problems.</a>
+<a class="reference external" href="https://www.clawpack.org/fvmhp_materials/">Finite Volume Methods for Hyperbolic Problems.</a>
 Cambridge University Press, Cambridge, UK, 2002.</p>
 <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="nd">@book</span><span class="p">{</span><span class="n">LeVeque</span><span class="o">-</span><span class="n">FVMHP</span><span class="p">,</span>
     <span class="n">Author</span> <span class="o">=</span> <span class="p">{</span><span class="n">R</span><span class="o">.</span> <span class="n">J</span><span class="o">.</span> <span class="n">LeVeque</span><span class="p">},</span>
     <span class="n">Title</span> <span class="o">=</span> <span class="p">{</span><span class="n">Finite</span> <span class="n">Volume</span> <span class="n">Methods</span> <span class="k">for</span> <span class="n">Hyperbolic</span> <span class="n">Problems</span><span class="p">},</span>
     <span class="n">Publisher</span> <span class="o">=</span> <span class="p">{</span><span class="n">Cambridge</span> <span class="n">University</span> <span class="n">Press</span><span class="p">},</span>
     <span class="n">Year</span> <span class="o">=</span> <span class="p">{</span><span class="mi">2002</span><span class="p">},</span>
-    <span class="n">Url</span> <span class="o">=</span> <span class="p">{</span><span class="n">http</span><span class="p">:</span><span class="o">//</span><span class="n">www</span><span class="o">.</span><span class="n">clawpack</span><span class="o">.</span><span class="n">org</span><span class="o">/</span><span class="n">book</span><span class="o">.</span><span class="n">html</span><span class="p">}}</span>
+    <span class="n">Url</span> <span class="o">=</span> <span class="p">{</span><span class="n">https</span><span class="p">:</span><span class="o">//</span><span class="n">www</span><span class="o">.</span><span class="n">clawpack</span><span class="o">.</span><span class="n">org</span><span class="o">/</span><span class="n">fvmhp_materials</span><span class="o">/</span><span class="p">}}</span>
 </pre></div>
 </div>
 <p>See <span class="xref std std-ref">gallery_fvmbook</span> for some sample results from this book.</p>

diff --git a/dev/fgmax_tools_module.html b/dev/fgmax_tools_module.html
@@ -136,14 +136,14 @@ <h3>Navigation</h3>
 <p>Alternatively, can set indexing==’xy’ so that X,Y and other
 arrays have same layout as topo arrays:</p>
 <aside class="system-message">
-<p class="system-message-title">System Message: ERROR/3 (<span class="docutils literal">/Users/rjl/clawpack_src/clawpack_master/geoclaw/src/python/geoclaw/fgmax_tools.py:docstring of clawpack.geoclaw.fgmax_tools.FGmaxGrid.read_output</span>, line 8)</p>
+<p class="system-message-title">System Message: ERROR/3 (<span class="docutils literal">/Users/rjl/git/clawpack/geoclaw/src/python/geoclaw/fgmax_tools.py:docstring of clawpack.geoclaw.fgmax_tools.FGmaxGrid.read_output</span>, line 8)</p>
 <p>Unexpected indentation.</p>
 </aside>
 <blockquote>
 <div><p>X[j,i],Y[j,i] corresponds to point x[i],y[j]</p>
 </div></blockquote>
 <aside class="system-message">
-<p class="system-message-title">System Message: WARNING/2 (<span class="docutils literal">/Users/rjl/clawpack_src/clawpack_master/geoclaw/src/python/geoclaw/fgmax_tools.py:docstring of clawpack.geoclaw.fgmax_tools.FGmaxGrid</span>, line 1)</p>
+<p class="system-message-title">System Message: WARNING/2 (<span class="docutils literal">/Users/rjl/git/clawpack/geoclaw/src/python/geoclaw/fgmax_tools.py:docstring of clawpack.geoclaw.fgmax_tools.FGmaxGrid</span>, line 1)</p>
 <p>Block quote ends without a blank line; unexpected unindent.</p>
 </aside>
 <p>This is useful if you want to save the fgmax results in same format as 

diff --git a/dev/fvmbook.html b/dev/fvmbook.html
@@ -86,15 +86,16 @@ <h3>Navigation</h3>
 
   <section id="examples-from-the-book-fvmhp">
 <span id="fvmbook"></span><h1>Examples from the book FVMHP<a class="headerlink" href="#examples-from-the-book-fvmhp" title="Permalink to this heading">¶</a></h1>
-<p>The book
-<a class="reference external" href="http://faculty.washington.edu/rjl/book.html">Finite Volume Methods for Hyperbolic Problems</a>
+<p>The book <a class="reference external" href="https://www.clawpack.org/fvmhp_materials/">Finite Volume Methods for Hyperbolic Problems</a>
 contains many examples that link to Clawpack codes used to create the
-figures in the book.  These codes are  available for Clawpack
-4.3 via the
-<a class="reference external" href="http://faculty.washington.edu/rjl/book.html">book webpage</a></p>
-<p>Some of have been converted to Clawpack 5.x form, with a <cite>setrun.py</cite>
-file for setting run time data and a <cite>setplot.py</cite> file for specifying plots
-with Python.  See:</p>
+figures in the book.  These codes were originally developed for Clawpack
+4.3 and these versions are still available from
+<a class="reference external" href="https://depts.washington.edu/clawpack/clawpack-4.3/book.html">this webpage</a>,
+but they will only run with Clawpack 4.3, which has not been developed since
+2006.</p>
+<p>Many of the examples have been converted to Clawpack 5.x form, with
+a <cite>setrun.py</cite> file for setting run time data and a <cite>setplot.py</cite>
+file for specifying plots with Python.  See:</p>
 <blockquote>
 <div><ul class="simple">
 <li><p><a class="reference internal" href="setrun.html#setrun"><span class="std std-ref">Specifying classic run-time parameters in setrun.py</span></a></p></li>
@@ -103,12 +104,19 @@ <h3>Navigation</h3>
 </div></blockquote>
 <section id="available-examples">
 <h2>Available examples<a class="headerlink" href="#available-examples" title="Permalink to this heading">¶</a></h2>
-<p>The examples converted so far can be found in the
+<p>The examples converted to v5.x form so far can be found in the
 directory <cite>apps/fvmbook</cite> if you clone the <cite>apps</cite> repository.
 (See <a class="reference internal" href="apps.html#apps"><span class="std std-ref">Clawpack Applications repository</span></a>.)</p>
 <p>You can also browse the examples and plots/animations of the results in the
 <a class="reference external" href="http://www.clawpack.org/gallery/gallery/gallery_fvmbook.html">Clawpack gallery of fvmbook applications</a></p>
 </section>
+<section id="youtube-videos">
+<h2>YouTube Videos<a class="headerlink" href="#youtube-videos" title="Permalink to this heading">¶</a></h2>
+<p>A set of 25 videos on material from the book were recorded in 2023 and are
+available in <a class="reference external" href="https://www.youtube.com/playlist?list=PLHJVj2zE9oLRPo7Xn1QI6WTl9QrBXLkqS">this playlist</a>
+on the <a class="reference external" href="https://www.youtube.com/channel/UCxIdwWtDvUG_kdn-KiSVroQ">Clawpack YouTube channel</a>.
+For a summary of the contents of each video, see <a class="reference external" href="https://faculty.washington.edu/rjl/classes/am574w2023/lectures.html">this webpage</a>.</p>
+</section>
 </section>
 
 
@@ -128,6 +136,7 @@ <h3><a href="contents.html">Table of Contents</a></h3>
     <ul>
 <li><a class="reference internal" href="#">Examples from the book FVMHP</a><ul>
 <li><a class="reference internal" href="#available-examples">Available examples</a></li>
+<li><a class="reference internal" href="#youtube-videos">YouTube Videos</a></li>
 </ul>
 </li>
 </ul>

diff --git a/dev/galleries.html b/dev/galleries.html
@@ -101,11 +101,13 @@ <h3>Navigation</h3>
 <li><p><cite>$CLAW/apps</cite></p></li>
 </ul>
 <p>which must be obtained separately from the main installation of Clawpack,
-see <a class="reference internal" href="apps.html#apps"><span class="std std-ref">Clawpack Applications repository</span></a>.
-The directory <cite>$CLAW/apps/notebooks</cite> contains a number of Jupyter
+see <a class="reference internal" href="apps.html#apps"><span class="std std-ref">Clawpack Applications repository</span></a>.</p>
+<p>The directory <cite>$CLAW/apps/notebooks</cite> contains a number of Jupyter
 notebooks that illustrate various aspects of Clawpack.
 Many of these are also visible in rendered html form in the
 <a class="reference external" href="http://www.clawpack.org/gallery/notebooks.html">Gallery of Notebooks</a>.</p>
+<p>The directory <cite>$CLAW/apps/fvmbook</cite> contains a number of
+<a class="reference internal" href="fvmbook.html#fvmbook"><span class="std std-ref">Examples from the book FVMHP</span></a>.</p>
 </section>
 
 

diff --git a/dev/geoclaw_util_module.html b/dev/geoclaw_util_module.html
@@ -115,7 +115,7 @@ <h3>Navigation</h3>
 <p>Note: If using this to initialize a radially-symmetric 2d velocity on the
 sphere based on a radial velocity U(r), symmetric about (x0, y0), set:</p>
 <aside class="system-message">
-<p class="system-message-title">System Message: ERROR/3 (<span class="docutils literal">/Users/rjl/clawpack_src/clawpack_master/geoclaw/src/python/geoclaw/util.py:docstring of clawpack.geoclaw.util.bearing</span>, line 9)</p>
+<p class="system-message-title">System Message: ERROR/3 (<span class="docutils literal">/Users/rjl/git/clawpack/geoclaw/src/python/geoclaw/util.py:docstring of clawpack.geoclaw.util.bearing</span>, line 9)</p>
 <p>Unexpected indentation.</p>
 </aside>
 <blockquote>