Releases: choderalab/openmoltools
Releases · choderalab/openmoltools
Bugfix release: FIx openMM namcespace changes
Bugfix release: Enable compatibility with ambertools 20
This bugfix release enables compatibility with AmberTools 20 deployed on conda-forge, which includes a development version of ParmEd that erroneously reports its version is 0.0.0.
Fix GAFF bugs and silence bondtype warnings
This release fixes GAFF bugs and silences bondtype warnings.
We also switch to use GitHub Actions for testing.
default charging, bondtypes and mdtraj compatibility
This release:
- update as
mdtraj.topology.from_dataframe
now returns four values - using
OEAM1BCCELF10Charges
as default, withOEAM1BCCCharges
fallback - using
bondtype
instead ofantechamber
to avoid antechamber valency complaints
v0.8.4
This release:
- updates
forcefield_generator.py
to be consistent with openmm 7.4.0, while maintaining backwards compatibility with previous openmm versions - depreciates python 2.7 support
- bugfixes for osx
Unpin Libgfortran - Last Python 2.7
This release unpins libgfortran and updates packmol.
This is also the last release which will support Python 2.7 as the OpenEye Toolkits no longer are released for them.
0.8.2 - Normalize Molecule Bugfix
Bugfix for Normalize Molecule so OEIUPAC is now optional
Also cleans up some testing and build issues from not having a release for months.
v0.8.1
v0.8.0
This release:
- Removes acpype, which had been deprecated
- Changes license to MIT
- Implements new charging routine from OpenEye while maintaining legacy charging as an option
- Makes minor maintenance changes to Epik
- Allows standardization of water names (such as to allow proper water recognition via MDTraj)
v0.7.5: Feature extension and minor bugfixes
This release:
- Adds support for GAFF2 in
amber
utilities relating toantechamber
- Fixes some unit handling and debug information in system checking utilities
- Adjusts standardization of files written in
openeye
andforcefield_generators
modules
This is a minor maintenance release