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Releases: choderalab/openmoltools

Bugfix release: FIx openMM namcespace changes

14 Sep 21:01
96292f7
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Bugfix release: Enable compatibility with ambertools 20

28 May 00:13
1575b16
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This bugfix release enables compatibility with AmberTools 20 deployed on conda-forge, which includes a development version of ParmEd that erroneously reports its version is 0.0.0.

See conda-forge/ambertools-feedstock#35 and #274

Fix GAFF bugs and silence bondtype warnings

15 Feb 17:12
50be07a
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This release fixes GAFF bugs and silences bondtype warnings.

We also switch to use GitHub Actions for testing.

default charging, bondtypes and mdtraj compatibility

12 Feb 18:07
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This release:

  • update as mdtraj.topology.from_dataframe now returns four values
  • using OEAM1BCCELF10Charges as default, with OEAM1BCCCharges fallback
  • using bondtype instead of antechamber to avoid antechamber valency complaints

v0.8.4

13 Sep 13:51
1473c93
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This release:

  • updates forcefield_generator.py to be consistent with openmm 7.4.0, while maintaining backwards compatibility with previous openmm versions
  • depreciates python 2.7 support
  • bugfixes for osx

Unpin Libgfortran - Last Python 2.7

07 Mar 16:50
b618efb
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This release unpins libgfortran and updates packmol.

This is also the last release which will support Python 2.7 as the OpenEye Toolkits no longer are released for them.

0.8.2 - Normalize Molecule Bugfix

16 Feb 15:15
1450505
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Bugfix for Normalize Molecule so OEIUPAC is now optional

Also cleans up some testing and build issues from not having a release for months.

v0.8.1

30 May 02:57
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v0.8.1 Pre-release
Pre-release

This release:

  • Gaff2 template generator (#260)
  • Add a 2A buffer during packing as suggested by packmol's docs for periodic boundary conditions (#261)

v0.8.0

21 May 04:00
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This release:

  • Removes acpype, which had been deprecated
  • Changes license to MIT
  • Implements new charging routine from OpenEye while maintaining legacy charging as an option
  • Makes minor maintenance changes to Epik
  • Allows standardization of water names (such as to allow proper water recognition via MDTraj)

v0.7.5: Feature extension and minor bugfixes

28 Feb 16:53
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This release:

  • Adds support for GAFF2 in amber utilities relating to antechamber
  • Fixes some unit handling and debug information in system checking utilities
  • Adjusts standardization of files written in openeye and forcefield_generators modules

This is a minor maintenance release