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Add links to stable docs
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jchodera committed Feb 3, 2019
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Expand Up @@ -13,15 +13,15 @@ A batteries-included toolkit for the GPU-accelerated OpenMM molecular simulation

Features include:

- high-quality Langevin integrators, including [g-BAOAB](http://rspa.royalsocietypublishing.org/content/472/2189/20160138), [VVVR](http://pubs.acs.org/doi/abs/10.1021/jp411770f), and other splittings
- nonequilibrium integrators for free energy calculations or [nonequilibrium candidate Monte Carlo (NCMC)](http://dx.doi.org/10.1073/pnas.1106094108)
- an extensible Markov chain Monte Carlo (MCMC) framework for molecular simulations
- high-quality [Langevin integrators](https://openmmtools.readthedocs.io/en/stable/integrators.html#langevin-integrators), including [g-BAOAB](http://rspa.royalsocietypublishing.org/content/472/2189/20160138), [VVVR](http://pubs.acs.org/doi/abs/10.1021/jp411770f), and other splittings
- [nonequilibrium integrators](https://openmmtools.readthedocs.io/en/stable/integrators.html#nonequilibrium-integrators) for free energy calculations or [nonequilibrium candidate Monte Carlo (NCMC)](http://dx.doi.org/10.1073/pnas.1106094108)
- an extensible [Markov chain Monte Carlo (MCMC) framework](https://openmmtools.readthedocs.io/en/stable/mcmc.html) for molecular simulations
- enhanced sampling methods, including replica-exchange (REMD) and self-adjusted mixture sampling (SAMS)
- factories for generating [alchemically-modified](http://alchemistry.org) systems for absolute and relative free energy calculations
- a suite of test systems for benchmarking, validation, and debugging
- user-friendly storage interface layer to remove requirement that user know how to store all their data-types on disk
- [alchemical factories](https://openmmtools.readthedocs.io/en/stable/alchemy.html) for generating [alchemically-modified](http://alchemistry.org) systems for absolute and relative free energy calculations
- a suite of [test systems](https://openmmtools.readthedocs.io/en/stable/testsystems.html) for benchmarking, validation, and debugging
- user-friendly storage interface layer

See the [documentation](http://openmmtools.readthedocs.io) at [ReadTheDocs](http://openmmtools.readthedocs.io).
See the [full documentation](http://openmmtools.readthedocs.io) at [ReadTheDocs](http://openmmtools.readthedocs.io).

#### License

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