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Plate_reader#2

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mark-polk wants to merge 31 commits intomainchoderalab/fluorescence-assay:mainfrom plate_readerchoderalab/fluorescence-assay:plate_readerCopy head branch name to clipboard

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Commits

Commits on Oct 24, 2024

• Added i-control XML parsing to plate_reader module.

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• Test commit

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• Changed from | operator to Optional to fix Python 3.9 failure

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Commits on Oct 25, 2024

• Redid IControlXML parsing and removed templating of read_file from ABC.

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• Merging

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Commits on Nov 29, 2024

• Implemented BeautifulSoup4 for XML parsing.

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• Switched to base Python NaN to remove NumPy dependency.

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• Merge branch 'plate_reader' of https://github.com/choderalab/fluorescence-assay into plate_reader

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• Actually removed NumPy dependency this time.

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• Added method to get parameter from IControlXML.

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• Fixed get_parameter.

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• Started plotting module.

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• Added placeholder for docstring to IControlXML.

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• Started plotting module

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• Added methods to plot corrected spectrum and dose response.

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Commits on Nov 30, 2024

• Added title to plot formatting.

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Commits on Dec 3, 2024

• Quick implementation of absorption measurement.

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Commits on Dec 4, 2024

• Temporary fix: hardcoding values

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• Fixed hardcoding

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