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v0.19
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@holtgrewe holtgrewe released this 08 Dec 16:03
· 600 commits to main since this release
v0.19
9b9dcdb

This is a bugfix release.

As with all recent releases, Jannovar is best installed through Maven Central.
Alternatively you can directly download the compiled jannovar-cli-0.19.jar.

manual

  • Manual loads version from central POM file now
  • Adjusting manual links to point to javadoc.io

jannovar-core

  • Fixing integration of HGNC into the downloaded databases
    • For UCSC, HGNC records are searched based on the Entrez ID.
      If HGNC does not know the Entrez then only the Entrez ID from UCSC is written as additional ID.
    • For RefSeq, linking is done through Entrez ID.
      If HGNC does not know the Entrez then only the Entrez ID from RefSeq is written as additional ID.
    • For ENSEMBL linking is done through the ENSEMBL gene id.
      If this is not known to HGNC then no additional IDs are annotated.
  • Fixing problem with UnsupportedOperationException in jannovar-htsjdk
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