doctest failure in ~/work/PRISMA.jl/PRISMA.jl/src/checklist.jl ```jldoctest julia> using PRISMA julia> checklist_template() "checklist.csv" julia> checklist_read("checklist.csv") 49×4 DataFrame Row │ Section and Topic Item # Checklist Item Location where item is reported │ String String String String ─────┼─────────────────────────────────────────────────────────────────────────────────────────────────────────────── 1 │ TITLE 2 │ Title 1 Identify the report as a systema… 3 │ ABSTRACT 4 │ Abstract 2 See the PRISMA 2020 for Abstract… 5 │ INTRODUCTION 6 │ Rationale 3 Describe the rationale for the r… 7 │ Objectives 4 Provide an explicit statement of… 8 │ METHODS 9 │ Eligibility criteria 5 Specify the inclusion and exclus… 10 │ Information sources 6 Specify all databases, registers… 11 │ Search strategy 7 Present the full search strategi… 12 │ Selection process 8 Specify the methods used to deci… 13 │ Data collection process 9 Specify the methods used to coll… 14 │ Data items 10a List and define all outcomes for… 15 │ 10b List and define all other variab… 16 │ Study risk of bias assessment 11 Specify the methods used to asse… 17 │ Effect measures 12 Specify for each outcome the eff… 18 │ Synthesis methods 13a Describe the processes used to d… 19 │ 13b Describe any methods required to… 20 │ 13c Describe any methods used to tab… 21 │ 13d Describe any methods used to syn… 22 │ 13e Describe any methods used to exp… 23 │ 13f Describe any sensitivity analyse… 24 │ Reporting bias assessment 14 Describe any methods used to ass… 25 │ Certainty assessment 15 Describe any methods used to ass… 26 │ RESULTS 27 │ Study selection 16a Describe the results of the sear… 28 │ 16b Cite studies that might appear t… 29 │ Study characteristics 17 Cite each included study and pre… 30 │ Risk of bias in studies 18 Present assessments of risk of b… 31 │ Results of individual studies 19 For all outcomes, present, for e… 32 │ Results of syntheses 20a For each synthesis, briefly summ… 33 │ 20b Present results of all statistic… 34 │ 20c Present results of all investiga… 35 │ 20d Present results of all sensitivi… 36 │ Reporting biases 21 Present assessments of risk of b… 37 │ Certainty of evidence 22 Present assessments of certainty… 38 │ DISCUSSION 39 │ Discussion 23a Provide a general interpretation… 40 │ 23b Discuss any limitations of the e… 41 │ 23c Discuss any limitations of the r… 42 │ 23d Discuss implications of the resu… 43 │ OTHER INFORMATION 44 │ Registration and protocol 24a Provide registration information… 45 │ 24b Indicate where the review protoc… 46 │ 24c Describe and explain any amendme… 47 │ Support 25 Describe sources of financial or… 48 │ Competing interests 26 Identify the

doctest failure in ~/work/PRISMA.jl/PRISMA.jl/src/checklist.jl ```jldoctest julia> using PRISMA julia> checklist_df() 49×4 DataFrame Row │ Section and Topic Item # Checklist Item Location where item is reported │ String String String String ─────┼─────────────────────────────────────────────────────────────────────────────────────────────────────────────── 1 │ TITLE 2 │ Title 1 Identify the report as a systema… 3 │ ABSTRACT 4 │ Abstract 2 See the PRISMA 2020 for Abstract… 5 │ INTRODUCTION 6 │ Rationale 3 Describe the rationale for the r… 7 │ Objectives 4 Provide an explicit statement of… 8 │ METHODS 9 │ Eligibility criteria 5 Specify the inclusion and exclus… 10 │ Information sources 6 Specify all databases, registers… 11 │ Search strategy 7 Present the full search strategi… 12 │ Selection process 8 Specify the methods used to deci… 13 │ Data collection process 9 Specify the methods used to coll… 14 │ Data items 10a List and define all outcomes for… 15 │ 10b List and define all other variab… 16 │ Study risk of bias assessment 11 Specify the methods used to asse… 17 │ Effect measures 12 Specify for each outcome the eff… 18 │ Synthesis methods 13a Describe the processes used to d… 19 │ 13b Describe any methods required to… 20 │ 13c Describe any methods used to tab… 21 │ 13d Describe any methods used to syn… 22 │ 13e Describe any methods used to exp… 23 │ 13f Describe any sensitivity analyse… 24 │ Reporting bias assessment 14 Describe any methods used to ass… 25 │ Certainty assessment 15 Describe any methods used to ass… 26 │ RESULTS 27 │ Study selection 16a Describe the results of the sear… 28 │ 16b Cite studies that might appear t… 29 │ Study characteristics 17 Cite each included study and pre… 30 │ Risk of bias in studies 18 Present assessments of risk of b… 31 │ Results of individual studies 19 For all outcomes, present, for e… 32 │ Results of syntheses 20a For each synthesis, briefly summ… 33 │ 20b Present results of all statistic… 34 │ 20c Present results of all investiga… 35 │ 20d Present results of all sensitivi… 36 │ Reporting biases 21 Present assessments of risk of b… 37 │ Certainty of evidence 22 Present assessments of certainty… 38 │ DISCUSSION 39 │ Discussion 23a Provide a general interpretation… 40 │ 23b Discuss any limitations of the e… 41 │ 23c Discuss any limitations of the r… 42 │ 23d Discuss implications of the resu… 43 │ OTHER INFORMATION 44 │ Registration and protocol 24a Provide registration information… 45 │ 24b Indicate where the review protoc… 46 │ 24c Describe and explain any amendme… 47 │ Support 25 Describe sources of financial or… 48 │ Competing interests 26 Identify the report as a systema… 49 │ Availability of data, code and o…

doctest failure in ~/work/PRISMA.jl/PRISMA.jl/src/flow_diagram.jl ```jldoctest julia> using PRISMA julia> flow_diagram_df() 41×3 DataFrame Row │ box_num box_text result │ Int64 String Int64? ─────┼───────────────────────────────────────────────────── 1 │ 1 Previous studies missing 2 │ 2 Identification of new studies vi… missing 3 │ 3 Identification of new studies vi… missing 4 │ 4 Identification missing 5 │ 5 Screening missing 6 │ 6 Included missing 7 │ 7 Studies included in previous ver… 0 8 │ 7 Reports of studies included in p… 0 9 │ 8 Records identified from: missing 10 │ 8 Database or Register 1 0 11 │ 8 Database or Register 2 0 12 │ 8 Database or Register 3 0 13 │ 9 Records removed before screening: missing 14 │ 9 Duplicate records removed 0 15 │ 9 Records marked as ineligible by … 0 16 │ 9 Records removed for other reasons 0 17 │ 10 Records screened 0 18 │ 11 Records excluded 0 19 │ 12 Reports sought for retrieval 0 20 │ 13 Reports not retrieved 0 21 │ 14 Reports assessed for eligibility 0 22 │ 15 Reports excluded: missing 23 │ 15 Reason 1 0 24 │ 15 Reason 2 0 25 │ 15 Reason 3 0 26 │ 16 New studies included in review 0 27 │ 16 Reports of new included studies 0 28 │ 17 Total studies included in review 0 29 │ 17 Reports of total included studies 0 30 │ 18 Records identified from: missing 31 │ 18 Websites 0 32 │ 18 Organizations 0 33 │ 18 Citation searching 0 34 │ 18 Other 0 35 │ 19 Reports sought for retrieval 0 36 │ 20 Reports not retrieved 0 37 │ 21 Reports assessed for eligibility 0 38 │ 22 Reports excluded: missing 39 │ 22 Reason 1 0 40 │ 22 Reason 2 0 41 │ 22 Reason 3 0 ``` Subexpression: flow_diagram_df() Evaluated output: 41×3 DataFrame Row │ box_num box_text result │ Int64 String Int64? ─────┼───────────────────────────────────────────────────── 1 │ 1 Previous studies missing 2 │ 2 Identification of new studies vi… missing 3 │ 3 Identification of new studies vi… missing 4 │ 4 Identification missing 5 │ 5 Screening missing 6 │ 6 Included missing 7 │ 7 Studies included in previous ver… 0 8 │ 7 Reports of studies included in p… 0 ⋮ │ ⋮ ⋮ ⋮ 35 │ 19 Reports sought for retrieval 0 36 │ 20 Reports not retrieved 0 37 │ 21 Reports assessed for eligibility 0 38 │ 22 Reports excluded: missing 39 │ 22 Reason 1 0 40 │ 22 Reason 2 0 41 │ 22 Reason 3 0 26 rows omitted Expected output: 41×3 DataFrame Row │ box_num box_text result

doctest failure in ~/work/PRISMA.jl/PRISMA.jl/src/flow_diagram.jl ```jldoctest julia> using PRISMA julia> flow_diagram_template() "flow_diagram.csv" julia> flow_diagram_read("flow_diagram.csv") 41×3 DataFrame Row │ box_num box_text result │ Int64 String Int64? ─────┼───────────────────────────────────────────────────── 1 │ 1 Previous studies missing 2 │ 2 Identification of new studies vi… missing 3 │ 3 Identification of new studies vi… missing 4 │ 4 Identification missing 5 │ 5 Screening missing 6 │ 6 Included missing 7 │ 7 Studies included in previous ver… 0 8 │ 7 Reports of studies included in p… 0 9 │ 8 Records identified from: missing 10 │ 8 Database or Register 1 0 11 │ 8 Database or Register 2 0 12 │ 8 Database or Register 3 0 13 │ 9 Records removed before screening: missing 14 │ 9 Duplicate records removed 0 15 │ 9 Records marked as ineligible by … 0 16 │ 9 Records removed for other reasons 0 17 │ 10 Records screened 0 18 │ 11 Records excluded 0 19 │ 12 Reports sought for retrieval 0 20 │ 13 Reports not retrieved 0 21 │ 14 Reports assessed for eligibility 0 22 │ 15 Reports excluded: missing 23 │ 15 Reason 1 0 24 │ 15 Reason 2 0 25 │ 15 Reason 3 0 26 │ 16 New studies included in review 0 27 │ 16 Reports of new included studies 0 28 │ 17 Total studies included in review 0 29 │ 17 Reports of total included studies 0 30 │ 18 Records identified from: missing 31 │ 18 Websites 0 32 │ 18 Organizations 0 33 │ 18 Citation searching 0 34 │ 18 Other 0 35 │ 19 Reports sought for retrieval 0 36 │ 20 Reports not retrieved 0 37 │ 21 Reports assessed for eligibility 0 38 │ 22 Reports excluded: missing 39 │ 22 Reason 1 0 40 │ 22 Reason 2 0 41 │ 22 Reason 3 0 ``` Subexpression: flow_diagram_read("flow_diagram.csv") Evaluated output: 41×3 DataFrame Row │ box_num box_text result │ Int64 String Int64? ─────┼───────────────────────────────────────────────────── 1 │ 1 Previous studies missing 2 │ 2 Identification of new studies vi… missing 3 │ 3 Identification of new studies vi… missing 4 │ 4 Identification missing 5 │ 5 Screening missing 6 │ 6 Included missing 7 │ 7 Studies included in previous ver… 0 8 │ 7 Reports of studies included in p… 0 ⋮ │ ⋮ ⋮ ⋮ 35 │ 19 Reports sought for retrieval 0 36 │ 20 Reports not retrieved 0 37 │ 21 Reports assessed for eligibility 0 38 │ 22 Reports excluded: missing 39 │ 22 Reason 1 0 40 │ 22 Reason 2 0 41 │ 22 Reason 3 0 26 rows omitted Ex

Process completed with exit code 1.

The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2, actions/cache@v1, codecov/codecov-action@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v2, julia-actions/setup-julia@v1, actions/cache@v1, codecov/codecov-action@v2. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/

The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2, actions/cache@v1, codecov/codecov-action@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v2, julia-actions/setup-julia@v1, actions/cache@v1, codecov/codecov-action@v2. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/

The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2, actions/cache@v1, codecov/codecov-action@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v2, julia-actions/setup-julia@v1, actions/cache@v1, codecov/codecov-action@v2. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/

The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2, actions/cache@v1, codecov/codecov-action@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v2, julia-actions/setup-julia@v1, actions/cache@v1, codecov/codecov-action@v2. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/

The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2, actions/cache@v1, codecov/codecov-action@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v2, julia-actions/setup-julia@v1, actions/cache@v1, codecov/codecov-action@v2. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/

The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2, actions/cache@v1, codecov/codecov-action@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v2, julia-actions/setup-julia@v1, actions/cache@v1, codecov/codecov-action@v2. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/

The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v2. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/

The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2, actions/cache@v1, codecov/codecov-action@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v2, julia-actions/setup-julia@v1, actions/cache@v1, codecov/codecov-action@v2. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/