[pre-commit.ci] pre-commit autoupdate

updates:
- [github.com/pre-commit/pre-commit-hooks: v4.0.1 → v4.6.0](pre-commit/pre-commit-hooks@v4.0.1...v4.6.0)
- [github.com/commitizen-tools/commitizen: v2.37.0 → v3.27.0](commitizen-tools/commitizen@v2.37.0...v3.27.0)
- [github.com/adrienverge/yamllint.git: v1.26.3 → v1.35.1](https://github.com/adrienverge/yamllint.git/compare/v1.26.3...v1.35.1)
- [github.com/executablebooks/mdformat: 0.7.14 → 0.7.17](hukkin/mdformat@0.7.14...0.7.17)
- [github.com/python-jsonschema/check-jsonschema: 0.18.4 → 0.29.0](python-jsonschema/check-jsonschema@0.18.4...0.29.0)
- [github.com/asottile/pyupgrade: v2.37.2 → v3.16.0](asottile/pyupgrade@v2.37.2...v3.16.0)
- [github.com/psf/black: 22.6.0 → 24.4.2](psf/black@22.6.0...24.4.2)
- https://github.com/charliermarsh/ruff-pre-commit → https://github.com/astral-sh/ruff-pre-commit
- [github.com/astral-sh/ruff-pre-commit: v0.0.225 → v0.5.2](astral-sh/ruff-pre-commit@v0.0.225...v0.5.2)
- [github.com/kynan/nbstripout: 0.5.0 → 0.7.1](kynan/nbstripout@0.5.0...0.7.1)
- [github.com/nbQA-dev/nbQA: 1.6.1 → 1.8.5](nbQA-dev/nbQA@1.6.1...1.8.5)
- [github.com/snakemake/snakefmt: v0.6.0 → v0.10.2](snakemake/snakefmt@v0.6.0...v0.10.2)

.pre-commit-config.yaml

@@ -2,25 +2,25 @@ default_stages: [commit]
 
 repos:
   - repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v4.0.1
+    rev: v4.6.0
     hooks:
       - id: trailing-whitespace
       - id: end-of-file-fixer
       - id: check-yaml
 
   - repo: https://github.com/commitizen-tools/commitizen
-    rev: v2.37.0
+    rev: v3.27.0
     hooks:
       - id: commitizen
 
   - repo: https://github.com/adrienverge/yamllint.git
-    rev: v1.26.3
+    rev: v1.35.1
     hooks:
       - id: yamllint
         args: ["-d relaxed"]
 
   - repo: https://github.com/executablebooks/mdformat
-    rev: 0.7.14 # Use the ref you want to point at
+    rev: 0.7.17 # Use the ref you want to point at
     hooks:
       - id: mdformat
         # Optionally add plugins
@@ -29,38 +29,38 @@ repos:
           - mdformat-black
 
   - repo: https://github.com/python-jsonschema/check-jsonschema
-    rev: 0.18.4
+    rev: 0.29.0
     hooks:
       - id: check-github-workflows
 
   - repo: https://github.com/asottile/pyupgrade
-    rev: v2.37.2
+    rev: v3.16.0
     hooks:
       - id: pyupgrade
 
   - repo: https://github.com/psf/black
-    rev: 22.6.0
+    rev: 24.4.2
     hooks:
       - id: black
 
-  - repo: https://github.com/charliermarsh/ruff-pre-commit
-    rev: v0.0.225
+  - repo: https://github.com/astral-sh/ruff-pre-commit
+    rev: v0.5.2
     hooks:
       - id: ruff
 
   - repo: https://github.com/kynan/nbstripout
-    rev: 0.5.0
+    rev: 0.7.1
     hooks:
       - id: nbstripout
         args: ["--keep-output"]
 
   - repo: https://github.com/nbQA-dev/nbQA
-    rev: 1.6.1
+    rev: 1.8.5
     hooks:
       - id: nbqa-black
       - id: nbqa-ruff
 
   - repo: https://github.com/snakemake/snakefmt
-    rev: v0.6.0
+    rev: v0.10.2
     hooks:
       - id: snakefmt