Code

Add initial extension#1

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Merged

CodyCBakerPhD merged 46 commits intomaincatalystneuro/ndx-extracellular-channels:mainfrom initial-extensioncatalystneuro/ndx-extracellular-channels:initial-extensionCopy head branch name to clipboardJul 23, 2024

+4,216-45

Commits

Commits on Apr 19, 2024

• Add initial extension without tests or custom api

  rly

  committed
  13ebfce

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• Merge branch 'main' into initial-extension

  CodyCBakerPhD

  authored
  8b1c0a8

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• Update README.md

  CodyCBakerPhD

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Commits on Apr 21, 2024

• Add tests, small updates to spec

  rly

  committed
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• Add "in_mm", add example usage, update tests

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  committed
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Commits on Apr 30, 2024

• Add comments

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Commits on Jun 1, 2024

• Delete notebooks/example.ipynb

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• Remove references to tetrodeseries

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• Update spec/ndx-extracellular-channels.extensions.yaml

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• Clarify planar_contour

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• Minor refactor, support probeinterface IO

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• Fix lint

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• Add probeinterface to dev env

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• Fix probeinterface import

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Commits on Jun 4, 2024

• Add back ProbeModel.model, remove 1D contour case

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• Update ruff config to latest recommended usage

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Commits on Jun 29, 2024

• Change name of device_channel

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• Rename actual_x to confirmed_x

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Commits on Jun 30, 2024

• Restructure position fields

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• Rearrange spec, update readme

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• Update probeinterface test

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• Apply black

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• Update docstring

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• Update comments

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• Update doc

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Commits on Jul 2, 2024

• Add asserts to test all

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Commits on Jul 11, 2024

• Fix probeinterface converter shape keys

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• Remove print

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• Apply black, ruff, isort

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Commits on Jul 12, 2024

• Make contact required, minor other fixes

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• Improve eseries api for unit, fix value to microvolts

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• Make plane_axes realistic

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  62a3ae5

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• Fix

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  c8da35f

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• Fix mermaid typo

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  e45e439

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• Fix mermaid typo

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Commits on Jul 19, 2024

• Apply suggestions from code review

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• "reference_mode" -> "electrical_reference_mode"

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• Add "ground", rename "electrical_reference_description"

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• Remove "device_channel" from ContactsTable

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• Apply black

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Commits on Jul 20, 2024

• fix name

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Commits on Jul 22, 2024

• Update doc for "reference_contact" and angles

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• Move ProbeInsertion from ChannelsTable to Probe

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• Update mermaid diagram for probe_insertion move

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  fd700a6

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• Fix relative_position_in_mm should be in um

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• Remove ContactsTable.relative_position_in_um.reference

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