release: version 1.1.0 🚀

HISTORY.md

@@ -0,0 +1,102 @@
+Changelog
+=========
+
+
+(unreleased)
+------------
+- Better release process. [jkobject]
+- Format and clean. [jkobject]
+- Wip. [jkobject]
+- Pushing the tests. [jkobject]
+- Adding codecov. [jkobject]
+- Updating the makefile. [jkobject]
+- Update package version. [jkobject]
+
+
+1.0.2 (2024-08-11)
+------------------
+- Release: version 1.0.2 🚀 [jkobject]
+- Release: version 1.0.1 🚀 [jkobject]
+- Debug. [jkobject]
+- Adding tests. [jkobject]
+- Adding documentation. [jkobject]
+
+
+1.0.0 (2024-08-06)
+------------------
+- Release: version 1.0.0 🚀 [jkobject]
+- Merge branch 'dev' into main. [jkobject]
+- Debug enrichment and centrality. [jkobject]
+- Adding new plotting. [jkobject]
+- Merge branch 'dev' of https://github.com/cantinilab/GRnnData into dev.
+  [jkobject]
+- Adding background. [maestro-jk]
+- Better background. [jkobject]
+- Some more debugs. [jkobject]
+- Solve issues. [jkobject]
+- Wip on plotting gene networks. [jkobject]
+- Making it work on new hardware. [maestro-jk]
+- Tiny side case. [jkobject]
+- Better utils. [jkobject]
+- Working with mouse. [jkobject]
+- Some new methods. [jkobject]
+- Some more install requirements and new functions. [jkobject]
+- Some more docs and better deps. [jkobject]
+- Adding some more features. [jkobject]
+- Update README.md. [Jérémie Kalfon]
+
+
+1.0.1 (2024-01-11)
+------------------
+- Making the release. [jkobject]
+- Working on improving grnndata. [jkobject]
+- Testing and creating a first version of GRnnData. [jkobject]
+- Finish switch to peotry. [jkobject]
+- Update LICENSE. [Jérémie Kalfon]
+- Improving and making it ready for first release. [jkobject]
+- Update. [jkobject]
+- Update extract_links to return output sorted by scores. [Rémi
+  Trimbour]
+- Add mu file. [jkobject]
+- Merge pull request #1 from
+  cantinilab/dependabot/github_actions/stefanzweifel/git-auto-commit-
+  action-5. [Jérémie Kalfon]
+
+  Bump stefanzweifel/git-auto-commit-action from 4 to 5
+- ✅ Ready to clone and code. [dependabot[bot]]
+- Bump stefanzweifel/git-auto-commit-action from 4 to 5.
+  [dependabot[bot]]
+
+  Bumps [stefanzweifel/git-auto-commit-action](https://github.com/stefanzweifel/git-auto-commit-action) from 4 to 5.
+  - [Release notes](https://github.com/stefanzweifel/git-auto-commit-action/releases)
+  - [Changelog](https://github.com/stefanzweifel/git-auto-commit-action/blob/master/CHANGELOG.md)
+  - [Commits](https://github.com/stefanzweifel/git-auto-commit-action/compare/v4...v5)
+
+  ---
+  updated-dependencies:
+  - dependency-name: stefanzweifel/git-auto-commit-action
+    dependency-type: direct:production
+    update-type: version-update:semver-major
+  ...
+- Merge pull request #3 from
+  cantinilab/dependabot/github_actions/actions/setup-python-5. [Jérémie
+  Kalfon]
+
+  Bump actions/setup-python from 4 to 5
+- ✅ Ready to clone and code. [dependabot[bot]]
+- Bump actions/setup-python from 4 to 5. [dependabot[bot]]
+
+  Bumps [actions/setup-python](https://github.com/actions/setup-python) from 4 to 5.
+  - [Release notes](https://github.com/actions/setup-python/releases)
+  - [Commits](https://github.com/actions/setup-python/compare/v4...v5)
+
+  ---
+  updated-dependencies:
+  - dependency-name: actions/setup-python
+    dependency-type: direct:production
+    update-type: version-update:semver-major
+  ...
+- ✅ Ready to clone and code. [jkobject]
+- Initial commit. [Jérémie Kalfon]
+
+

grnndata/VERSION

@@ -1 +1 @@
-77595{TAG}
+1.1.0

pyproject.toml

@@ -4,7 +4,7 @@ build-backend = "poetry.core.masonry.api"
 
 [tool.poetry]
 name = "grnndata"
-version = "1.0.2"
+version = "1.1.0"
 description = "Awesome gene regulatory network enhanced anndata"
 authors = [ "jkobject",]
 readme = [ "README.md", "LICENSE",]
@@ -19,6 +19,7 @@ scipy = "*"
 networkx = "*"
 gseapy = "1.*"
 numpy = "*"
+leidenalg = "*"
 louvain = "*"
 powerlaw = "*"
 pyvis = "*"
@@ -34,41 +35,41 @@ grnndata = "grnndata.__main__:main"
 
 
 [tool.poetry.dependencies.pytest]
-version = "^7.4.3"
+version = "1.1.0"
 optional = true
 
 [tool.poetry.dependencies.coverage]
-version = "^7.3.2"
+version = "1.1.0"
 optional = true
 
 [tool.poetry.dependencies.flake8]
-version = "^6.1.0"
+version = "1.1.0"
 optional = true
 
 [tool.poetry.dependencies.black]
-version = "^23.10.1"
+version = "1.1.0"
 optional = true
 
 [tool.poetry.dependencies.isort]
-version = "^5.12.0"
+version = "1.1.0"
 optional = true
 
 [tool.poetry.dependencies.pytest-cov]
-version = "^4.1.0"
+version = "1.1.0"
 optional = true
 
 [tool.poetry.dependencies.mypy]
-version = "^1.6.1"
+version = "1.1.0"
 optional = true
 
 [tool.poetry.dependencies.gitchangelog]
-version = "^3.0.4"
+version = "1.1.0"
 optional = true
 
 [tool.poetry.dependencies.mkdocs]
-version = "^1.5.3"
+version = "1.1.0"
 optional = true
 
 [tool.poetry.dependencies.toml]
-version = "^0.10.2"
+version = "1.1.0"
 optional = true