Add categorical patient level filtering for generic-assay-data-counts #1942
Workflow file for this run
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| name: Security integration tests | |
| on: [push, pull_request] | |
| jobs: | |
| build: | |
| name: Security integration tests | |
| runs-on: ubuntu-latest | |
| env: | |
| PORTAL_SOURCE_DIR: /home/runner/work/cbioportal/cbioportal/cbioportal | |
| PORTAL_COMPOSE_DIR: /home/runner/work/cbioportal/cbioportal/cbioportal-docker-compose | |
| PORTAL_INFO_DIR: /home/runner/work/cbioportal/cbioportal/portalInfo | |
| steps: | |
| - name: 'Checkout cbioportal repo' | |
| uses: actions/checkout@v2 | |
| with: | |
| path: ./cbioportal | |
| - name: 'Set up JDK 21' | |
| uses: oracle-actions/setup-java@v1 | |
| with: | |
| website: oracle.com | |
| release: 21 | |
| - name: 'Cache Maven packages' | |
| uses: actions/cache@v1 | |
| with: | |
| path: ~/.m2 | |
| key: ${{ runner.os }}-m2-${{ hashFiles('**/pom.xml') }} | |
| restore-keys: ${{ runner.os }}-m2 | |
| - name: 'Download Chrome' | |
| uses: browser-actions/setup-chrome@latest | |
| - name: 'Copy Application.Properties' | |
| working-directory: ./cbioportal | |
| run: | | |
| cp src/main/resources/application.properties.EXAMPLE src/main/resources/application.properties | |
| - name: 'Run integration tests' | |
| working-directory: ./cbioportal | |
| run: | | |
| mvn verify -Pintegration-test |