chore(prod): bind metadata.json file for nodes

c3g · Jan 9, 2024 · 60008fe · 60008fe
1 parent c309cab
commit 60008fe
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Showing 2 changed files with 7 additions and 4 deletions.
diff --git a/epivar-prod/docker-compose.yml b/epivar-prod/docker-compose.yml
@@ -41,9 +41,10 @@ services:
       - EPIVAR_IMPORT_MAX_P_VAL=0.05
       - EPIVAR_LOW_COUNT_THRESHOLD=5
     volumes:
-      # dataset configuration: about Markdown file and EpiVar config.js
+      # dataset configuration: about Markdown file, EpiVar config.js, tracks metadata.json
       - node1/about.md:/app/data/about.md
       - node1/config.js:/app/config.js:ro
+      - node1/metadata.json:/app/data/metadata.json:ro
       # genotypes: VCF + index file
       - /flu-infection-data/node1/allSamples.hc.vqsr.mil.snpId.snpeff.dbnsfp.vcf.gz:/app/data/genotypes.vcf.gz:ro
       - /flu-infection-data/node1/allSamples.hc.vqsr.mil.snpId.snpeff.dbnsfp.vcf.gz.tbi:/app/data/genotypes.vcf.gz.tbi:ro
@@ -88,9 +89,10 @@ services:
       - EPIVAR_IMPORT_MAX_P_VAL=0.05
       - EPIVAR_LOW_COUNT_THRESHOLD=5
     volumes:
-      # dataset configuration: about Markdown file and EpiVar config.js
+      # dataset configuration: about Markdown file, EpiVar config.js, tracks metadata.json
       - node2/about.md:/app/data/about.md
       - node2/config.js:/app/config.js:ro
+      - node2/metadata.json:/app/data/metadata.json:ro
       # genotypes: VCF + index file
       - /flu-infection-data/node2/allSamples.hc.vqsr.mil.snpId.snpeff.dbnsfp.vcf.gz:/app/data/genotypes.vcf.gz:ro
       - /flu-infection-data/node2/allSamples.hc.vqsr.mil.snpId.snpeff.dbnsfp.vcf.gz.tbi:/app/data/genotypes.vcf.gz.tbi:ro

diff --git a/example.docker-compose.yml b/example.docker-compose.yml
@@ -14,9 +14,10 @@ services:
       - EPIVAR_IMPORT_MAX_P_VAL=0.05
       - EPIVAR_LOW_COUNT_THRESHOLD=5
     volumes:
-      # dataset configuration: about Markdown file and EpiVar config.js
+      # dataset configuration: about Markdown file, EpiVar config.js, tracks metadata.json
       - /path/to/about.md:/app/data/about.md  # about file
-      - /path/to/config.js:/app/config.js  # dataset configuration file, see config.example.js
+      - /path/to/config.js:/app/config.js:ro  # dataset configuration file, see config.example.js
+      - /path/to/metadata.json:/app/metadata.json:ro
       # genotypes: VCF + index file
       - /path/to/genotypes.vcf.gz:/app/data/genotypes.vcf.gz:ro
       - /path/to/genotypes.vcf.gz.tbi:/app/data/genotypes.vcf.gz.tbi:ro