chore: gene renaming

c3g · Jan 11, 2024 · 3bec54c · 3bec54c
1 parent 8ed3dbd
commit 3bec54c
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Showing 2 changed files with 13 additions and 6 deletions.
diff --git a/models/genes.mjs b/models/genes.mjs
@@ -8,14 +8,21 @@ const GENE_RENAMES = {
   FAM214B: "ATOSB",
   BZRAP1: "TSPOAP1",
   C19orf60: "REX1BD",
+  KIAA0100: "BLTP2",
+  CRAMP1L: "CRAMP1",
+  TCEB3: "ELOA",
 };
 
-export const normalizeGeneName = name => {
-  const nameNorm = name.replace(/[^a-zA-Z\d]/g, '-');
-  if (nameNorm in GENE_RENAMES) return GENE_RENAMES[nameNorm];
-  return nameNorm;
-}
+export const renameGeneIfNeeded = (name) => {
+  if (name in GENE_RENAMES) return GENE_RENAMES[name];
+  return name;
+};
+
+export const normalizeGeneName = (name) => {
+  return renameGeneIfNeeded(name.replace(/[^a-zA-Z\d]/g, '-'));
+};
 
 export default {
+  renameGeneIfNeeded,
   normalizeGeneName,
 };
diff --git a/scripts/import-genes.mjs b/scripts/import-genes.mjs
@@ -26,7 +26,7 @@ const parseGene = line => {
   const fields = line.trim().split('\t');
   return [
     Gene.normalizeGeneName(fields[0]),  // id
-    fields[0],  // name
+    Gene.renameGeneIfNeeded(fields[0]),  // name
   ];
 };