chore(deps): update all non-major dependencies

bzkf · Nov 29, 2024 · 9bbb70a · 9bbb70a
1 parent 48c9f95
commit 9bbb70a
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Showing 15 changed files with 36 additions and 36 deletions.
diff --git a/charts/onco-analytics-on-fhir/Chart.lock b/charts/onco-analytics-on-fhir/Chart.lock
@@ -1,15 +1,15 @@
 dependencies:
 - name: akhq
   repository: https://akhq.io/
-  version: 0.24.0
+  version: 0.25.1
 - name: stream-processors
   repository: https://miracum.github.io/charts
-  version: 1.6.0
+  version: 1.7.25
 - name: hapi-fhir-jpaserver
   repository: https://hapifhir.github.io/hapi-fhir-jpaserver-starter
-  version: 0.15.0
+  version: 0.17.1
 - name: fhir-gateway
   repository: https://miracum.github.io/charts
-  version: 6.2.0
-digest: sha256:a8beeea01663ba075258174948eee1c377bdbf1cb70252c01e188003f477bd18
-generated: "2024-02-22T07:51:46.369204628Z"
+  version: 6.3.51
+digest: sha256:0f767b3b918c7fbdd11adc958a03e20166bb5d0ddd7b209099c911e5e46d810d
+generated: "2024-11-29T13:03:20.244122264Z"
diff --git a/charts/onco-analytics-on-fhir/Chart.yaml b/charts/onco-analytics-on-fhir/Chart.yaml
@@ -8,19 +8,19 @@ dependencies:
   - name: akhq
     condition: akhq.enabled
     repository: https://akhq.io/
-    version: 0.24.0
+    version: 0.25.1
   - condition: stream-processors.enabled
     name: stream-processors
     repository: https://miracum.github.io/charts
-    version: 1.6.0
+    version: 1.7.25
   - condition: hapi-fhir-jpaserver.enabled
     name: hapi-fhir-jpaserver
     repository: https://hapifhir.github.io/hapi-fhir-jpaserver-starter
-    version: 0.15.0
+    version: 0.17.1
   - condition: fhir-gateway.enabled
     name: fhir-gateway
     repository: https://miracum.github.io/charts
-    version: 6.2.0
+    version: 6.3.51
 # x-release-please-start-version
 version: 2.3.1
 appVersion: 2.3.1

diff --git a/charts/onco-analytics-on-fhir/values.yaml b/charts/onco-analytics-on-fhir/values.yaml
@@ -107,7 +107,7 @@ stream-processors:
         image:
           registry: ghcr.io
           repository: miracum/kafka-fhir-to-server
-          tag: v2.0.6@sha256:155859d275b636e356a99dac3592aa602eef6b68a8f1fe82f7e9670e2be1ef33
+          tag: v2.2.1@sha256:c23d6e12f3cb63500384ff4fd4e69dc4feaef162e9250ecf66cde0080b42544e
           pullPolicy: IfNotPresent
         env:
           - name: FHIR_URL
@@ -137,7 +137,7 @@ stream-processors:
         image:
           registry: ghcr.io
           repository: miracum/obds-to-fhir
-          tag: v2.0.15@sha256:c359ef5449068ff0c1231c3ee237801f2fb76932ab9a16386813d02c07ac9f7d
+          tag: v2.1.0@sha256:6752d517b423388cce447aaca75a714034bc0a7c0f545c9111d5e45a126fab89
           pullPolicy: IfNotPresent
         env:
           - name: OPENTRACING_JAEGER_ENABLED

diff --git a/charts/prerequisites/Chart.lock b/charts/prerequisites/Chart.lock
@@ -1,6 +1,6 @@
 dependencies:
 - name: strimzi-kafka-operator
   repository: oci://quay.io/strimzi-helm
-  version: 0.39.0
-digest: sha256:c986c32b5483a8d395c49960c179f12d775ce5ef2c55ac5cb63f376d9fc97660
-generated: "2024-01-11T20:52:49.55346174Z"
+  version: 0.44.0
+digest: sha256:04c48bb66f6b9e8cfd36ef49ea9859d397d4497c9107dd046b498431da6bbe57
+generated: "2024-11-29T13:03:50.89894005Z"
diff --git a/charts/prerequisites/Chart.yaml b/charts/prerequisites/Chart.yaml
@@ -7,7 +7,7 @@ kubeVersion: ">= 1.21.0"
 dependencies:
   - name: strimzi-kafka-operator
     repository: oci://quay.io/strimzi-helm
-    version: 0.39.0
+    version: 0.44.0
 # x-release-please-start-version
 version: 2.3.1
 appVersion: 2.3.1

diff --git a/docker-compose/compose.fhir-server.yaml b/docker-compose/compose.fhir-server.yaml
@@ -35,7 +35,7 @@ services:
       - "8082:8080"
 
   fhir-db:
-    image: docker.io/library/postgres:15.6@sha256:1ebd963e5c598f944a4e9ba27de4c95289d663dcc73731025aa53c5254094d8f
+    image: docker.io/library/postgres:15.10@sha256:a35b3c0190dac5a82ec1778b34cb4963bdd9d161f80381a6297be6e2c3c13a7c
     restart: unless-stopped
     deploy:
       resources:

diff --git a/docker-compose/compose.full.yaml b/docker-compose/compose.full.yaml
@@ -1,6 +1,6 @@
 services:
   kafka:
-    image: docker.io/bitnami/kafka:3.6.1@sha256:b5254050e61d1912ed9cf3f7107adc6a21ff29d85047b46d7b6df57cf25fa2f7
+    image: docker.io/bitnami/kafka:3.9.0@sha256:978583d0859444d3bc6b6592b38b5af5a834d473db51441071a20e67e0afb945
     restart: unless-stopped
     cap_drop:
       - ALL
@@ -25,7 +25,7 @@ services:
       - "kafka_data:/bitnami:rw"
 
   kafka-connect:
-    image: ghcr.io/miracum/util-images/cricketeerone-kafka-connect:v1.6.0@sha256:5d4c79d5b9d64562d8906aec14c66ed5f48ddb0f9e7f12949547ab89b69e3f0f
+    image: ghcr.io/miracum/util-images/cricketeerone-kafka-connect:v1.6.2@sha256:66fa69028dffe5aabe2323a782aa365fbe45394393f8da53cc283375bc910399
     restart: unless-stopped
     cap_drop:
       - ALL
@@ -52,7 +52,7 @@ services:
       - 8083:8083
 
   akhq:
-    image: docker.io/tchiotludo/akhq:0.24.0@sha256:6ccf8323ae6e93a893107f857cd9f7210add3569743b2c8528c6567967cc636f
+    image: docker.io/tchiotludo/akhq:0.25.1@sha256:cfaef8f419c4e4b78c583597d6428b63166e90eeb194af890264d68051a22180
     restart: unless-stopped
     cap_drop:
       - ALL

diff --git a/docker-compose/compose.obds-to-fhir.yaml b/docker-compose/compose.obds-to-fhir.yaml
@@ -1,6 +1,6 @@
 services:
   obds-to-fhir:
-    image: ghcr.io/bzkf/obds-to-fhir:v2.2.0@sha256:b5d264c849fb5a19d8af1677b6f9adc26d70108c22e4f2753d0b2472da39f038
+    image: ghcr.io/bzkf/obds-to-fhir:v2.2.3@sha256:fc22d3986e57475f6586da2035c7e8d407bb04b1449b94bee16edd4e0a92e674
     restart: unless-stopped
     cap_drop:
       - ALL

diff --git a/docker-compose/compose.pseudonymization.yaml b/docker-compose/compose.pseudonymization.yaml
@@ -1,6 +1,6 @@
 services:
   fhir-gateway:
-    image: ghcr.io/miracum/fhir-gateway:v3.12.8@sha256:2cf2d887b25594c04af3d6be302f8ccaea12dee90965fe4e2f81d24786ac3b6d
+    image: ghcr.io/miracum/fhir-gateway:v3.14.2@sha256:4a8d63755d26dbc81b2fc59afd15b7792fc73a23d76501b4a2433a93e8e9d100
     restart: unless-stopped
     cap_drop:
       - ALL
@@ -32,7 +32,7 @@ services:
       SERVICES_KAFKA_GENERATE_OUTPUT_TOPIC_REPLACE_WITH: "fhir.pseudonymized."
 
   fhir-pseudonymizer:
-    image: ghcr.io/miracum/fhir-pseudonymizer:v2.21.6@sha256:f250919efe324d31d9d442058256d6af58c0ea26980fc5852544a93cf8a71b1d
+    image: ghcr.io/miracum/fhir-pseudonymizer:v2.22.1@sha256:ce25487f1cab422bdb4d36231fd0f89d66a41a518a7823abfd03953b16e4719a
     restart: unless-stopped
     cap_drop:
       - ALL

diff --git a/docker-compose/datashield/compose.datashield.yaml b/docker-compose/datashield/compose.datashield.yaml
@@ -1,6 +1,6 @@
 services:
   opal:
-    image: docker.io/obiba/opal:4.6@sha256:50abaa400d5b474981c951719301ce4f3c9f5058090cc878e5e82b1b35342881
+    image: docker.io/obiba/opal:4.7@sha256:37acba4b52d91d93fd30bba78fd306d96901b33d214f2ba02048e5f29961008e
     restart: unless-stopped
     ipc: none
     security_opt:
@@ -32,7 +32,7 @@ services:
       - rock-2
 
   opal-db:
-    image: docker.io/library/postgres:16.2@sha256:4aea012537edfad80f98d870a36e6b90b4c09b27be7f4b4759d72db863baeebb
+    image: docker.io/library/postgres:16.6@sha256:5d65b8bdb20369ea902b987aa63cfe4983130bc8cd2c25830d126636b80b608d
     restart: unless-stopped
     ipc: private
     security_opt:

diff --git a/src/decompose_xmls/compose.yaml b/src/decompose_xmls/compose.yaml
@@ -12,7 +12,7 @@ services:
       - ./output-obds-reports:/app/output-obds-reports:rw
 
   kafka:
-    image: docker.io/bitnami/kafka:3.6.1@sha256:b5254050e61d1912ed9cf3f7107adc6a21ff29d85047b46d7b6df57cf25fa2f7
+    image: docker.io/bitnami/kafka:3.9.0@sha256:978583d0859444d3bc6b6592b38b5af5a834d473db51441071a20e67e0afb945
     restart: unless-stopped
     profiles:
       - kafka
@@ -33,7 +33,7 @@ services:
       # KAFKA_CFG_ADVERTISED_LISTENERS: LISTENER_DOCKER_INTERNAL://kafka:19092,LISTENER_DOCKER_EXTERNAL://${DOCKER_HOST_IP:-127.0.0.1}:9092
 
   akhq:
-    image: docker.io/tchiotludo/akhq:0.24.0@sha256:6ccf8323ae6e93a893107f857cd9f7210add3569743b2c8528c6567967cc636f
+    image: docker.io/tchiotludo/akhq:0.25.1@sha256:cfaef8f419c4e4b78c583597d6428b63166e90eeb194af890264d68051a22180
     restart: unless-stopped
     profiles:
       - kafka

diff --git a/src/decompose_xmls/requirements-test.txt b/src/decompose_xmls/requirements-test.txt
@@ -1,3 +1,3 @@
 pytest==7.4.4
-syrupy==4.6.1
+syrupy==4.8.0
 pytest-cov==4.1.0
diff --git a/src/decompose_xmls/requirements.txt b/src/decompose_xmls/requirements.txt
@@ -1,3 +1,3 @@
-pydantic==1.10.14
-confluent-kafka==2.3.0
-regex==2024.5.15
+pydantic==1.10.19
+confluent-kafka==2.6.1
+regex==2024.11.6
diff --git a/src/obds_fhir_to_opal/plots/requirements.txt b/src/obds_fhir_to_opal/plots/requirements.txt
@@ -1,8 +1,8 @@
 ipykernel==6.29.5
-ipython==8.26.0
-matplotlib==3.9.1
+ipython==8.30.0
+matplotlib==3.9.2
 matplotlib-inline==0.1.7
 numpy==1.26.4
-pandas==2.2.0
+pandas==2.2.3
 seaborn==0.13.2
 
diff --git a/src/obds_fhir_to_opal/requirements.txt b/src/obds_fhir_to_opal/requirements.txt
@@ -1,6 +1,6 @@
 pathling==6.2.1
-pydantic==1.10.14
+pydantic==1.10.19
 pyspark==3.3.4
-pandas==2.2.0
+pandas==2.2.3
 python-dateutil==2.9.0.post0
 xlsxwriter==3.2.0