CMV-Transient-Infection-Analysis

This repository contains the analysis code and data for "Transient oral human cytomegalovirus infections indicate inefficient viral spread from very few initially infected cells." http://jvi.asm.org/content/91/12/e00380-17.abstract

Data locations

1. Transient infection data from the Ugandan infant cohort are located in data-analysis/data/.
2. Simulation results are located in two locations:
   a. stochastic-model-analysis/model-data/
   b. A large simulation data set was published to dataverse and can be downloaded by clicking here.

Citation

Mayer BT, Krantz EM, Swan D, Ferrenberg J, Simmons K, Selke S, Huang M-L, Casper C, Corey L, Wald A, Schiffer JT, Gantt S*. 2017. Transient oral human cytomegalovirus infections indicate inefficient viral spread from very few initially infected cells. J Virol 91:e00380-17. https://doi.org/10.1128/JVI.00380-17.

* corresponding author