Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

[DRAFT] Beagle Imputation WDL #1238

Closed
wants to merge 26 commits into from

Conversation

mmorgantaylor
Copy link
Member

@mmorgantaylor mmorgantaylor commented Mar 14, 2024

Description

New WDL to run Imputation using the Beagle tool, based off of the existing Imputation.wdl that uses minimac4.

This is a WIP and won't be merged for a while while we iterate. Docker can be found in corresponding PR #114 in warp-tools.

Give your PR a concise yet descriptive title.
Please explain the changes you made here.
Explain the motivation for making this change. What existing problem does the pull request solve?
Mention any issues fixed, addressed, or otherwise related to this pull request, including issue numbers or hard links for issues in other repos.
You can delete these instructions once you have written your PR description.


Checklist

If you can answer "yes" to the following items, please add a checkmark next to the appropriate checklist item(s) and notify our WARP documentation team by tagging either @ekiernan or @kayleemathews in a comment on this PR.

  • Did you add inputs, outputs, or tasks to a workflow?
  • Did you modify, delete or move: file paths, file names, input names, output names, or task names?
  • If you made a changelog update, did you update the pipeline version number?

@dsde-jenkins
Copy link
Collaborator

Can one of the admins verify this patch?

1 similar comment
@dsde-jenkins
Copy link
Collaborator

Can one of the admins verify this patch?

@pullapprove pullapprove bot requested a review from kachulis March 14, 2024 14:29
Copy link

Remember to squash merge!

Copy link

Remember to squash merge!

Copy link

Remember to squash merge!

Copy link

Remember to squash merge!

This reverts commit 3757137.
Copy link

Remember to squash merge!

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

3 participants