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Add chrY to chrs variable for readCounter #106

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Add chrY to chrs variable for readCounter #106

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2 changes: 1 addition & 1 deletion scripts/snakemake/config/config_hg38.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -3,7 +3,7 @@ readCounterScript: /path/to/HMMcopy/bin/readCounter
#chrs:
# 1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,X,Y
chrs: # use if want UCSC chromosome naming for hg38
chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22,chrX
chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22,chrX,chrY
binSize: 1000000 # set window size to compute coverage
ichorCNA_libdir: None # include if ichorCNA R source files changed but package has not been updated within R

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