Fixes docker job and setup.sh updating

.github/workflows/buildandpush.yml

@@ -24,34 +24,24 @@ jobs:
       -
         name: Checkout
         uses: actions/checkout@v3
-      -
-        name: Set up QEMU
-        uses: docker/setup-qemu-action@v2
-      -
-        name: Set up Docker Buildx
-        uses: docker/setup-buildx-action@v2
-      -
-        name: Login to Docker Hub
-        uses: docker/login-action@v2
-        with:
-          username: ${{ secrets.DOCKERHUB_USERNAME }}
-          password: ${{ secrets.DOCKERHUB_TOKEN }}
       -
         name: Retrieve JAR version name
         run: |
-            wget https://raw.githubusercontent.com/bridgedb/BridgeDbWebservice/main/pom.xml
-            echo "BDBVERSION=$(cat pom.xml | grep -m 1 -oP "(?<=<bridgedb-version>).*" | sed 's|</bridgedb-version>||g')" >> $GITHUB_ENV 
+          wget https://raw.githubusercontent.com/bridgedb/BridgeDbWebservice/main/pom.xml
+          echo "BDBVERSION=$(cat pom.xml | grep -m 1 -oP "(?<=<bridgedb-version>).*" | sed 's|</bridgedb-version>||g')" >> $GITHUB_ENV 
+
       -
         name: Retrieve WebService version name
         run: |
-            wget https://raw.githubusercontent.com/bridgedb/BridgeDbWebservice/main/pom.xml
-            echo "BRIDGEDBWSVERSION=$(cat pom.xml | grep -m 1 -oP "(?<=<version>).*" | sed 's|</version>||g')" >> $GITHUB_ENV 
-            
+          wget https://raw.githubusercontent.com/bridgedb/BridgeDbWebservice/main/pom.xml
+          echo "BRIDGEDBWSVERSION=$(cat pom.xml | grep -m 1 -oP "(?<=<version>).*" | sed 's|</version>||g')" >> $GITHUB_ENV 
+
       - name: Update setup.sh with BDBWSVERSION
         run: |
-            cat setup.sh | sed 's|BRIDGEDBWSVERSION=".\+"|BRIDGEDBWSVERSION="${{ env.BRIDGEDBWSVERSION }}"|g'  > setup.sh
+          cat setup.sh | sed 's|BRIDGEDBWSVERSION=".\+"|BRIDGEDBWSVERSION="${{ env.BRIDGEDBWSVERSION }}"|g' > setup_tmp.sh
+          mv setup_tmp.sh setup.sh
       
-      - name: commit and push setup.sh # Test whether it is necessary to push before the docker action accesses repository from git context
+      - name: commit and push setup.sh 
         run: |
             git config --local user.name actions-user
             git config --local user.email "[email protected]"
@@ -67,6 +57,18 @@ jobs:
     runs-on: ubuntu-latest
     needs: update-version
     steps:  
+      -
+        name: Set up QEMU
+        uses: docker/setup-qemu-action@v2
+      -
+        name: Set up Docker Buildx
+        uses: docker/setup-buildx-action@v2
+      -
+        name: Login to Docker Hub
+        uses: docker/login-action@v2
+        with:
+          username: ${{ secrets.DOCKERHUB_USERNAME }}
+          password: ${{ secrets.DOCKERHUB_TOKEN }}
       -
         name: Retrieve tags
         run: |