Code

Standardising atlas file downloading#351

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alessandrofelder merged 24 commits intomainbrainglobe/brainglobe-atlasapi:mainfrom standardising_atlas_file_downloadingbrainglobe/brainglobe-atlasapi:standardising_atlas_file_downloadingCopy head branch name to clipboardNov 11, 2024

+351-323

Commits

Commits on Aug 9, 2024

• adding known_hash argument to AtlasConfig

  viktorpm

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• defining DEFAULT_WORKDIR in config.py to standardise atlas location during packaging

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Commits on Aug 12, 2024

• adding DEFAULT_WORKDIR and __atlas__ to packaging scripts

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Commits on Aug 16, 2024

• implementing pooch

  viktorpm

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Commits on Sep 3, 2024

• implementing pooch

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Commits on Sep 4, 2024

• complete refactoring of humanatlas.py, implementing pooch

  viktorpm

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• Merge branch 'main' into standardising_atlas_file_downloading

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• [pre-commit.ci] auto fixes from pre-commit.com hooks

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Commits on Sep 6, 2024

• fixing file downloading

  viktorpm

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• Restructuring code: metadata on top

  viktorpm

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Commits on Oct 31, 2024

• Update brainglobe_atlasapi/atlas_generation/atlas_scripts/allen_cord.py

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• Update brainglobe_atlasapi/atlas_generation/atlas_scripts/humanatlas.py

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• Update brainglobe_atlasapi/atlas_generation/atlas_scripts/osten_mouse.py

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• Update brainglobe_atlasapi/atlas_generation/atlas_scripts/perens_lsfm_mouse.py

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• Update brainglobe_atlasapi/atlas_generation/atlas_scripts/azba_zfish.py

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• Update brainglobe_atlasapi/atlas_generation/atlas_scripts/whs_sd_rat.py

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• setting PARALLEL = False, removing unnecessary comment

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• updating load_nii import

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Commits on Nov 6, 2024

• removing structuring headers

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• moving __version__ back to the top

  viktorpm

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• Merge branch 'main' into standardising_atlas_file_downloading

  viktorpm

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• [pre-commit.ci] auto fixes from pre-commit.com hooks

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Commits on Nov 11, 2024

• Apply suggestions from code review

  alessandrofelder

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• fix module dunder, module docstring and import order

  alessandrofelder

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