Fix "Pango" labels in figures and tables

Related to #72
blab · Dec 19, 2023 · 3f474f7 · 3f474f7
1 parent 05e467f
commit 3f474f7
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Showing 4 changed files with 3 additions and 3 deletions.
diff --git a/manuscript/Snakefile b/manuscript/Snakefile
@@ -49,7 +49,7 @@ rule concat_HDBSCAN_tables:
         fullKDE = "manuscript/tables/total_HDBSCAN_table.csv",
         table = "manuscript/tables/accuracy_table.tex",
     params:
-        disease_names = ["Influenza H3N2", "SARS-CoV-2 (Nextstrain clade)", "SARS-CoV-2 (Nextclade pango)"],
+        disease_names = ["Influenza H3N2", "SARS-CoV-2 (Nextstrain clade)", "SARS-CoV-2 (Pango)"],
     conda: "../cartography.yml"
     shell:
         """

diff --git a/manuscript/figures/within_between_sars.png b/manuscript/figures/within_between_sars.png
diff --git a/manuscript/tables/accuracy_table.tex b/manuscript/tables/accuracy_table.tex
@@ -10,7 +10,7 @@
                               &    MDS & 0.15 &        0.0 \\
                               &   UMAP & 0.16 &        0.5 \\
                               &    PCA & 0.22 &        0.5 \\
- SARS-CoV-2 (Nextclade pango) &  t-SNE & 0.12 &        1.0 \\
+           SARS-CoV-2 (Pango) &  t-SNE & 0.12 &        1.0 \\
                               &    MDS & 0.23 &        0.0 \\
                               &   UMAP & 0.25 &        0.5 \\
                               &    PCA & 0.31 &        0.5 \\

diff --git a/notebooks/2023-07-24WithinVBetweenFigure.ipynb b/notebooks/2023-07-24WithinVBetweenFigure.ipynb
@@ -228,7 +228,7 @@
    "source": [
     "sars_labels_to_axis_labels = {\n",
     "    \"Nextstrain_clade\": \"Nextstrain clade\",\n",
-    "    \"Nextclade_pango_collapsed\": \"Nextclade pango\\ncollapsed\",\n",
+    "    \"Nextclade_pango_collapsed\": \"Pango\",\n",
     "    \"pca_label_for_Nextstrain_clade\": \"PCA cluster\",\n",
     "    \"mds_label_for_Nextstrain_clade\": \"MDS cluster\",\n",
     "    \"t-sne_label_for_Nextstrain_clade\": \"t-SNE cluster\",\n",