fixes #95

	name: snakemake-actions

	on: [push]
	jobs:
	formatting:
	runs-on: ubuntu-latest
	steps:
	- name: Checkout repository and submodules
	uses: actions/checkout@v2
	with:
	submodules: recursive
	- name: Formatting
	uses: github/super-linter@v4
	env:
	VALIDATE_ALL_CODEBASE: false
	DEFAULT_BRANCH: main
	GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
	VALIDATE_SNAKEMAKE_SNAKEFMT: true
	linting:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v2
	- name: Linting
	uses: snakemake/[email protected]
	with:
	directory: .test
	snakefile: workflow/Snakefile
	stagein: "conda config --set channel_priority strict"
	args: "--lint"

	dry-run:
	runs-on: ubuntu-latest
	needs:
	- linting
	- formatting
	steps:
	- name: Checkout repository and submodules
	uses: actions/checkout@v2
	with:
	submodules: recursive
	- name: Dry-run workflow
	uses: snakemake/[email protected]
	with:
	directory: .test
	snakefile: workflow/Snakefile
	stagein: "conda config --set channel_priority strict"
	args: "--use-conda --show-failed-logs --cores 2 --conda-cleanup-pkgs cache -n"

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