Allostery free enzyme ratio bug #472
Merged
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
It sounds like it should be a per-enzyme vector, but it's a per-edge one. Oops!
This is because Maud has jinja2 as a dependency. See https://data.safetycli.com/v/70612/97c/. I think it's not a serious problem because Maud doesn't provide access to any templates.
carrascomj
approved these changes
Aug 15, 2024
|
Also, I think |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Fixes a pretty big bug in Maud's Stan code: allostery was incorrect for models with isoenzymes because the function
get_allosterywas using the wrong free enzyme ratios.Checklist: