Merge pull request #36 from bioshape-analysis/uki

update requirements
bioshape-analysis · Oct 30, 2024 · 63251ce · 63251ce
2 parents 8380430 + 9b1db9f
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diff --git a/posts/CC-cells/Baker_grade.png b/posts/CC-cells/Baker_grade.png
diff --git a/posts/CC-cells/references.bib b/posts/CC-cells/references.bib
@@ -0,0 +1,10 @@
+@article{hillsley2022strategy,
+  title={A strategy to quantify myofibroblast activation on a continuous spectrum},
+  author={Hillsley, Alexander and Santoso, Matthew S and Engels, Sean M and Halwachs, Kathleen N and Contreras, Lydia M and Rosales, Adrianne M},
+  journal={Scientific reports},
+  volume={12},
+  number={1},
+  pages={12239},
+  year={2022},
+  publisher={Nature Publishing Group UK London}
+}
diff --git a/posts/CC-cells/requirements.txt b/posts/CC-cells/requirements.txt
@@ -0,0 +1,73 @@
+asttokens==2.4.1
+comm==0.2.2
+common==0.1.2
+contourpy==1.3.0
+cycler==0.12.1
+debugpy==1.8.7
+decorator==5.1.1
+executing==2.1.0
+filelock==3.16.1
+fonttools==4.54.1
+fsspec==2024.10.0
+geomstats==2.8.0
+ipykernel==6.29.5
+ipython==8.29.0
+jedi==0.19.1
+Jinja2==3.1.4
+joblib==1.4.2
+jupyter_client==8.6.3
+jupyter_core==5.7.2
+keopscore==2.2.3
+kiwisolver==1.4.7
+MarkupSafe==3.0.2
+matplotlib==3.9.2
+matplotlib-inline==0.1.7
+mpmath==1.3.0
+nest-asyncio==1.6.0
+networkx==3.4.2
+numpy==2.1.2
+nvidia-cublas-cu12==12.4.5.8
+nvidia-cuda-cupti-cu12==12.4.127
+nvidia-cuda-nvrtc-cu12==12.4.127
+nvidia-cuda-runtime-cu12==12.4.127
+nvidia-cudnn-cu12==9.1.0.70
+nvidia-cufft-cu12==11.2.1.3
+nvidia-curand-cu12==10.3.5.147
+nvidia-cusolver-cu12==11.6.1.9
+nvidia-cusparse-cu12==12.3.1.170
+nvidia-nccl-cu12==2.21.5
+nvidia-nvjitlink-cu12==12.4.127
+nvidia-nvtx-cu12==12.4.127
+packaging==24.1
+pandas==2.2.3
+parso==0.8.4
+petsc4py==3.21.5
+pexpect==4.9.0
+pillow==11.0.0
+platformdirs==4.3.6
+prompt_toolkit==3.0.48
+psutil==6.1.0
+ptyprocess==0.7.0
+pure_eval==0.2.3
+pybind11==2.13.6
+Pygments==2.18.0
+pykeops==2.2.3
+pyparsing==3.2.0
+python-dateutil==2.9.0.post0
+pytz==2024.2
+pyzmq==26.2.0
+scikit-learn==1.5.2
+scipy==1.14.1
+setuptools==75.2.0
+six==1.16.0
+stack-data==0.6.3
+sympy==1.13.1
+threadpoolctl==3.5.0
+torch==2.5.0
+tornado==6.4.1
+traitlets==5.14.3
+triton==3.1.0
+typing_extensions==4.12.2
+tzdata==2024.2
+virtualenv-clone==0.5.7
+wcwidth==0.2.13