Add prefix: eccDNA #1366
Open
Add prefix: eccDNA #1366
+31
−1
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
bgyori
reviewed
Jan 18, 2025
| @@ -30588,6 +30588,35 @@ | |||
| "pattern": "^\\d{7}$", | |||
| "uri_format": "http://purl.obolibrary.org/obo/ECAO_$1" | |||
| }, | |||
| "eccDNA": { | |||
There was a problem hiding this comment.
For new prefixes, the convention is to use all lowercase, but if capitalization is important to preserve in some form, then it can be done via synonyms (see also https://github.com/biopragmatics/bioregistry/blob/main/docs/CONTRIBUTING.md#minimum-new-prefix-requirements)
bgyori
reviewed
Jan 18, 2025
| "name": "Nalika Palayoor", | ||
| "orcid": "0009-0008-8406-631X" | ||
| }, | ||
| "description": "scEccDNAdb is a database of more than 3.1 million single cell single cell eccDNA entries of human and mouse samples, each with a unique identifiers and features such as oncogenes, enhancers, and structural variants. It also features tools for analyzing and visualizing eccDNA data.", |
There was a problem hiding this comment.
Suggested change
| "description": "scEccDNAdb is a database of more than 3.1 million single cell single cell eccDNA entries of human and mouse samples, each with a unique identifiers and features such as oncogenes, enhancers, and structural variants. It also features tools for analyzing and visualizing eccDNA data.", | |
| "description": "scEccDNAdb is a database of single cell eccDNA entries of human and mouse samples, each with a unique identifier and features such as oncogenes, enhancers, and structural variants..", |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
This pull request curates a new prefix eccDNA, which is a database based on single-cell whole genome sequencing data. This PR adds necessary metadata to bioregistry.json and adds the curated paper to currated_papers.tsv
https://pubmed.ncbi.nlm.nih.gov/39693568/