Skip to content

Commit

Permalink
Add new prefix for OMIA variants (#1172)
Browse files Browse the repository at this point in the history
* Add new prefix for OMIA variants

* Add integbio mapping

* Fix JSON formatting

* Add reviewer info

---------

Co-authored-by: Ben Gyori <[email protected]>
  • Loading branch information
marius-mather and bgyori authored Aug 21, 2024
1 parent f6c4b6e commit 2362a72
Showing 1 changed file with 65 additions and 0 deletions.
65 changes: 65 additions & 0 deletions src/bioregistry/data/bioregistry.json
Original file line number Diff line number Diff line change
Expand Up @@ -80307,6 +80307,71 @@
},
"uri_format": "https://omia.org/phene/omia:$1"
},
"omia.variant": {
"biocontext": {
"prefix": "OMIA"
},
"contact": {
"email": "[email protected]",
"github": "ImkeTammen",
"name": "Imke Tammen",
"orcid": "0000-0002-5520-6597"
},
"contributor_extras": [
{
"email": "[email protected]",
"github": "ImkeTammen",
"name": "Imke Tammen",
"orcid": "0000-0002-5520-6597"
}
],
"deprecated": false,
"description": "Online Mendelian Inheritance in Animals (OMIA) is a catalogue/compendium of inherited disorders, other (single-locus) traits, and associated genes and variants in more than 500 vertebrate animal species (other than human, mouse, rats, zebrafish and western clawed frog, which have their own resources). The 'omia.variant' prefix is used for genetic variants associated with phenes listed in OMIA",
"example": "1710",
"example_extras": [
"620"
],
"homepage": "https://omia.org",
"integbio": {
"alt_name": "Online Mendelian Inheritance in Animals",
"description": "OMIA is a database of inherited disorders, other (single-locus) traits, and genes in animals which is not include human, mouse and rat because of presence of their own resources. The records contain basical textual information, references, and links to OMIM, PubMed, and gene. The content on the site is manually curated.",
"fairsharing": "biodbcore-000579",
"homepage": "https://omia.org/home/",
"information_keywords": [
"Bibliography/Documents"
],
"maintainer": "University of Sydney",
"name": "OMIA",
"prefix": "nbdc00153",
"pubmeds": [
"12520001",
"33156546"
],
"status": "Active",
"target_keywords": [
"Genome/Gene",
"Health/Disease"
]
},
"keywords": [
"disorders",
"model organism database",
"traits"
],
"mappings": {
"biocontext": "OMIA",
"integbio": "nbdc00153"
},
"name": "OMIA variants",
"pattern": "^\\d+$",
"reviewer": {
"email": "[email protected]",
"github": "bgyori",
"name": "Benjamin M. Gyori",
"orcid": "0000-0001-9439-5346"
},
"uri_format": "https://omia.org/variant/omia.variant:$1"
},
"omiabis": {
"aberowl": {
"description": "An ontological version of MIABIS (Minimum Information About BIobank data Sharing)",
Expand Down

0 comments on commit 2362a72

Please sign in to comment.