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Restructure iedb prefix
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Mufaddal Naguthanawala committed Oct 31, 2024
1 parent 21ea943 commit 0fd1e79
Showing 1 changed file with 125 additions and 27 deletions.
152 changes: 125 additions & 27 deletions src/bioregistry/data/bioregistry.json
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Original file line number Diff line number Diff line change
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"uri_format": "http://www.ebi.ac.uk/chebi/searchId.do?chebiId=$1"
},
"providers": [
{
"code": "iedb.antigen",
"description": "A comprehensive collection of data on immune epitopes, covering experimental data and resources, including antigens",
"homepage": "https://www.iedb.org/",
"name": "Immune Epitope Database",
"uri_format": "https://www.iedb.org/antigen/ChEBI:$1"
},
{
"code": "chebi-img",
"description": "Image server from chebi",
Expand Down Expand Up @@ -54629,36 +54636,9 @@
"mappings": {
"fairsharing": "FAIRsharing.c886cd",
"integbio": "nbdc00924",
"miriam": "iedb",
"prefixcommons": "tied",
"re3data": "r3d100012702"
},
"miriam": {
"deprecated": false,
"description": "The Immune Epitope Database (IEDB) is a freely available resource funded by NIAID. It catalogs experimental data on antibody and T cell epitopes studied in humans, non-human primates, and other animal species in the context of infectious disease, allergy, autoimmunity and transplantation. The IEDB also hosts tools to assist in the prediction and analysis of epitopes.",
"homepage": "https://www.lji.org/",
"id": "00000865",
"name": "Immune Epitope Database (IEDB)",
"namespaceEmbeddedInLui": false,
"pattern": "^[0-9]+$",
"prefix": "iedb",
"sampleId": "1038233",
"uri_format": "https://www.iedb.org/reference/$1"
},
"name": "Immune Epitope Database",
"prefixcommons": {
"description": "The IEDB contains data related to antibody and T cell epitopes for humans, non-human primates, rodents, and other animal species.",
"example": "21",
"homepage": "http://www.iedb.org",
"keywords": [
"protein",
"small molecule"
],
"name": "The Immune Epitope Database (IEDB)",
"pattern": "^\\d+$",
"prefix": "tied",
"uri_format": "http://www.iedb.org/epId/$1"
},
"publications": [
{
"doi": "10.1093/nar/gku938",
Expand Down Expand Up @@ -54703,6 +54683,117 @@
}
}
},
"iedb.assay": {
"contributor": {
"email": "[email protected]",
"github": "nagutm",
"name": "Mufaddal Naguthanawala",
"orcid": "0009-0009-5240-7463"
},
"description": "Identifiers for specific experimental assays that serve as evidence for immune-related studies.",
"example": "1691753",
"github_request_issue": 1204,
"homepage": "https://www.iedb.org/",
"name": "Immune Epitope Database",
"part_of": "iedb",
"pattern": "^\\d+$",
"uri_format": "https://www.iedb.org/assay/$1"
},
"iedb.epitope": {
"contributor": {
"email": "[email protected]",
"github": "nagutm",
"name": "Mufaddal Naguthanawala",
"orcid": "0009-0009-5240-7463"
},
"description": "Identifiers for epitopes, which are the specific parts of antigens recognized by the immune system.",
"example": "117395",
"github_request_issue": 1204,
"homepage": "https://www.iedb.org/",
"mappings": {
"prefixcommons": "tied"
},
"name": "Immune Epitope Database",
"part_of": "iedb",
"pattern": "^\\d+$",
"prefixcommons": {
"description": "The IEDB contains data related to antibody and T cell epitopes for humans, non-human primates, rodents, and other animal species.",
"example": "21",
"homepage": "http://www.iedb.org",
"keywords": [
"protein",
"small molecule"
],
"name": "The Immune Epitope Database (IEDB)",
"pattern": "^\\d+$",
"prefix": "tied",
"uri_format": "http://www.iedb.org/epId/$1"
},
"uri_format": "https://www.iedb.org/epitope/$1"
},
"iedb.mhc": {
"contributor": {
"email": "[email protected]",
"github": "nagutm",
"name": "Mufaddal Naguthanawala",
"orcid": "0009-0009-5240-7463"
},
"description": "Identifiers for Major Histocompatibility Complex (MHC) restrictions of immune cells, detailing genetic factors that influence immune recognition.",
"example": "86",
"github_request_issue": 1204,
"homepage": "https://www.iedb.org/",
"name": "Immune Epitope Database",
"part_of": "iedb",
"pattern": "^\\d+$",
"uri_format": "https://www.iedb.org/mhc/$1"
},
"iedb.receptor": {
"contributor": {
"email": "[email protected]",
"github": "nagutm",
"name": "Mufaddal Naguthanawala",
"orcid": "0009-0009-5240-7463"
},
"description": "Identifiers for immune receptors, representing receptor complexes or groups studied for their interactions with antigens or epitopes.",
"example": "47",
"github_request_issue": 1204,
"homepage": "https://www.iedb.org/",
"name": "Immune Epitope Database",
"part_of": "iedb",
"pattern": "^\\d+$",
"uri_format": "https://www.iedb.org/receptor/$1"
},
"iedb.reference": {
"contributor": {
"email": "[email protected]",
"github": "nagutm",
"name": "Mufaddal Naguthanawala",
"orcid": "0009-0009-5240-7463"
},
"description": "Identifiers for references, typically linking to sources of evidence such as publications that support data within IEDB.",
"example": "1038233",
"github_request_issue": 1204,
"homepage": "https://www.iedb.org/",
"mappings": {
"miriam": "iedb"
},
"miriam": {
"deprecated": false,
"description": "The Immune Epitope Database (IEDB) is a freely available resource funded by NIAID. It catalogs experimental data on antibody and T cell epitopes studied in humans, non-human primates, and other animal species in the context of infectious disease, allergy, autoimmunity and transplantation. The IEDB also hosts tools to assist in the prediction and analysis of epitopes.",
"homepage": "https://www.lji.org/",
"id": "00000865",
"name": "Immune Epitope Database (IEDB)",
"namespaceEmbeddedInLui": false,
"pattern": "^[0-9]+$",
"prefix": "iedb",
"sampleId": "1038233",
"uri_format": "https://www.iedb.org/reference/$1"
},
"name": "Immune Epitope Database",
"part_of": "iedb",
"pattern": "^\\d+$",
"uri_format": "https://www.iedb.org/reference/$1"
},
"ieee.author": {
"contributor": {
"email": "[email protected]",
Expand Down Expand Up @@ -113695,6 +113786,13 @@
"uri_format": "http://www.uniprot.org/uniprot/$1"
},
"providers": [
{
"code": "iedb.antigen",
"description": "A comprehensive collection of data on immune epitopes, covering experimental data and resources, including antigens",
"homepage": "https://www.iedb.org/",
"name": "Immune Epitope Database",
"uri_format": "https://www.iedb.org/antigen/UNIPROT:$1"
},
{
"code": "omnipath",
"description": "Molecular interations endpoint from OmniPathDB",
Expand Down

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