Add prefix: asteraceaegd.plant and asteraceaegd.genome
#4708
Workflow file for this run
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| # This file configures the continuous integration (CI) system on GitHub. | |
| # Introductory materials can be found here: https://docs.github.com/en/actions/learn-github-actions/understanding-github-actions. | |
| # Documentation for editing this file can be found here: https://docs.github.com/en/actions/using-workflows/workflow-syntax-for-github-actions | |
| name: Tests | |
| on: | |
| push: | |
| branches: [ main ] | |
| pull_request: | |
| branches: [ main ] | |
| jobs: | |
| lint: | |
| name: Code Quality | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: [ "3.12", "3.9" ] | |
| tox-command: ["manifest", "lint", "pyroma", "mypy"] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: "Install uv" | |
| uses: "astral-sh/setup-uv@v3" | |
| with: | |
| enable-cache: true | |
| cache-dependency-glob: "pyproject.toml" | |
| - name: "Run command" | |
| run: | | |
| uvx -p ${{ matrix.python-version }} --with tox-uv tox -e ${{ matrix.tox-command }} | |
| docs: | |
| name: Documentation | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| # We only test documentation on the latest version | |
| # sphinx 8.0 / sphinx-rtd-theme 3.0 discontinued Python 3.9 support | |
| # a year early, which prompted re-thinking about this. | |
| python-version: [ "3.12" ] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: "Install uv" | |
| uses: "astral-sh/setup-uv@v3" | |
| with: | |
| enable-cache: true | |
| cache-dependency-glob: "pyproject.toml" | |
| - name: Install dependencies | |
| run: | | |
| sudo apt-get install graphviz | |
| - name: Check RST conformity with doc8 | |
| run: uvx -p ${{ matrix.python-version }} --with tox-uv tox -e doc8 | |
| - name: Check docstring coverage | |
| run: uvx -p ${{ matrix.python-version }} --with tox-uv tox -e docstr-coverage | |
| - name: Check documentation build with Sphinx | |
| run: uvx -p ${{ matrix.python-version }} --with tox-uv tox -e docs-test | |
| tests: | |
| name: Tests | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ ubuntu-latest, windows-latest ] | |
| python-version: [ "3.12", "3.9" ] | |
| pydantic: [ "pydantic1", "pydantic2" ] | |
| exclude: | |
| - os: windows-latest | |
| python-version: 3.9 | |
| - python-version: 3.9 | |
| pydantic: "pydantic1" | |
| - os: windows-latest | |
| pydantic: "pydantic1" | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: "Install uv" | |
| uses: "astral-sh/setup-uv@v3" | |
| with: | |
| enable-cache: true | |
| cache-dependency-glob: "pyproject.toml" | |
| - name: Test with pytest and generate coverage file | |
| run: | |
| uvx -p ${{ matrix.python-version }} --with tox-uv tox -e py-${{ matrix.pydantic }} | |
| - name: Upload coverage report to codecov | |
| uses: codecov/codecov-action@v4 | |
| if: success() | |
| with: | |
| file: coverage.xml |