Skip to content

Issues: biolink/kgx

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

45 Open 176 Closed
45 Open 176 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Parallel processing of single transform enhancement New feature or request
#501 opened Oct 17, 2024 by ptgolden
Update KGX code to process new merge.yaml design
#500 opened Aug 6, 2024 by hrshdhgd
Make more distinction between source and sink options when parsing CLI input bug Something isn't working
#491 opened Apr 15, 2024 by caufieldjh
Support duckdb as alternate sink/source...or more enhancement New feature or request
#482 opened Apr 1, 2024 by caufieldjh
4
KGX support for additional formats enhancement New feature or request
#481 opened Mar 27, 2024 by realmarcin
Undocumented requirements for input nodes/edges file names? bug Something isn't working
#471 opened Oct 25, 2023 by amykglen
KGX merge overwrites "provided_by" property
#463 opened Jul 12, 2023 by stimon
update KGX to optionally provide "retrieval_source_ids" attribute to collect information retrieval properties enhancement New feature or request
#458 opened Jun 22, 2023 by sierra-moxon
log_error in validation scales poorly bug Something isn't working
#440 opened Mar 21, 2023 by kevinschaper
1
kgx validate -o option writes an empty file, output goes to stderr rather than stdout bug Something isn't working
#435 opened Mar 15, 2023 by kevinschaper
2 tasks
Automate mapping of infores in primary_knowledge_source enhancement New feature or request
#430 opened Mar 10, 2023 by caufieldjh
1
1
Option to add un-prefixed labels in neo4j labels enhancement New feature or request
#428 opened Feb 16, 2023 by kevinschaper
neo_sink.py constraints not created in neo4j v5+ bug Something isn't working
#419 opened Nov 30, 2022 by frdougal
Knowledge Graph Exchange (KGE) Archive Download bug Something isn't working
#417 opened Nov 9, 2022 by codewarrior2000
Dynamic configuration of Biolink Model semantics in KGX validation enhancement New feature or request
#416 opened Nov 2, 2022 by RichardBruskiewich
add documentation to the kgx merge doc that shows when to use cat-merge as well as a set of steps to use merge config documentation enhancement New feature or request good first issue Good for newcomers
#414 opened Oct 24, 2022 by sierra-moxon
4 tasks
@sierra-moxon
KGX edge merge does not take into account enough attributes on the edge bug Something isn't working
#413 opened Oct 12, 2022 by sierra-moxon
1
Add ability to "turn off" KGX's prefix mapping functionality enhancement New feature or request
#412 opened Sep 19, 2022 by sierra-moxon
Description of affect of clique_merge on node properties
#394 opened Jun 6, 2022 by frdougal
1
command line option to drop "not" edges enhancement New feature or request good first issue Good for newcomers
#393 opened May 26, 2022 by sierra-moxon
@sierra-moxon
add ability to walk up ontologies to find Biolink-Model mappings enhancement New feature or request
#378 opened Mar 10, 2022 by sierra-moxon
2
Allow user-provided SSSOM maps to be used for prefix prioritization enhancement New feature or request
#369 opened Jan 12, 2022 by caufieldjh
1
Remove legacy Biolink Model fields like 'relation'
#363 opened Nov 27, 2021 by RichardBruskiewich 1.7.0
@sierra-moxon
1
annotation assertion axioms (including subsets/slims) should by default be treated as node properties bug Something isn't working
#358 opened Nov 15, 2021 by cmungall
2
Nodes with single value in multivalued field triggering validation errors bug Something isn't working
#354 opened Nov 2, 2021 by kevinschaper
@RichardBruskiewich
11
ProTip! Mix and match filters to narrow down what you’re looking for.