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[FIX] OWSom: Fix crash for data without class variable #6763
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Also, rename the PR to "[FIX] OWSom: Fix crash for data without class variable".
In description, replace Bugs in SOM #6750
with Fixes #6750
, which will automatically close #6750 when PR is merged.
Orange/widgets/unsupervised/owsom.py
Outdated
@@ -1018,7 +1018,8 @@ def make_domain(values, default_grp, offset): | |||
compute_value=GetGroups(id_to_group, default_grp, offset)) | |||
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if not self.data.domain.class_vars: | |||
class_vars, metas = grp_var, som_attrs | |||
self.data.domain.class_vars = () |
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Please remove the above. We consider Domain
immutable, so class_vars
must not be changed, neither is there any need to change them because that already equal ()
.
def test_make_domain_without_class_vars(self): | ||
widget = self.widget | ||
self.send_signal(self.widget.Inputs.data, self.iris) | ||
widget.data.domain.class_vars = None |
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You must not do this. widget.data
is a data table, and widget.data.domain
describes its columns. By removing classes, the table and its domain are inconsistent, and anything can happen. (Also. domain
is internally inconsistent because when class_var
is not None
, class_vars
equals (class_var, )
.)
Instead, you must construct a new domain and convert the table.
data = self.iris.transform(Domain(self.iris.domain.attributes))
self.send_signal(self.widget.Inputs.data, data)
The first line creates a new data table without class, and the second line sends it to the widget. Then you can remove widget.update_output()
.
self.send_signal(self.widget.Inputs.data, self.iris) | ||
widget.data.domain.class_vars = None | ||
widget.update_output() | ||
self.assertIsNotNone(self.get_output(widget.Outputs.annotated_data)) |
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This doesn't test much. You may want to test two things. First, if you want to test that the widget no longer crashes, this line is unnecessary -- it would crash in the previous line (prior to your fix). But a better test would be that the widget constructs a correct domain. The proper test is
def test_make_domain_without_class_vars(self):
widget = self.widget
data = self.iris.transform(Domain(self.iris.domain.attributes))
self.send_signal(self.widget.Inputs.data, data)
domain = self.get_output((widget.Outputs.annotated_data)).domain
self.assertEqual(domain.attributes, data.domain.attributes)
self.assertEqual(domain.class_var.name, ANNOTATED_DATA_FEATURE_NAME)
self.assertEqual([var.name for var in domain.metas],
["som_cell", "som_row", "som_col", "som_error"])
You incorrectly copied the test that I suggested. Please fix the indent. |
Codecov Report
Additional details and impacted files@@ Coverage Diff @@
## master #6763 +/- ##
==========================================
- Coverage 88.15% 88.15% -0.01%
==========================================
Files 323 323
Lines 70747 70748 +1
==========================================
- Hits 62369 62368 -1
- Misses 8378 8380 +2 |
Issue
Fixes #6750
Description of changes
Fixed TypeError: 'DiscreteVariable' object is not iterable.
Includes