Nexus provides a pan-genome compacted de Bruijn graph data structure using the bidirectional FM-index, with support for lossless approximate pattern matching using search schemes and subgraph visualization.
Updates with respect to Nexus v1.1.0:
- Nexus now supports creating the index starting from .fasta/.fa/.fna files instead of a preprocessed .txt file
- More efficient implementation for finding the strain corresponding to an occurrence