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Merge pull request #4 from bioinform/fix-retcode
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Fix return code
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Marghoob Mohiyuddin committed Feb 17, 2015
2 parents 38fbeb6 + 6d2074c commit a8e8f54
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion breakseq2/breakseq_top.py
Original file line number Diff line number Diff line change
Expand Up @@ -100,4 +100,4 @@ def breakseq2_workflow(sample=None, bplib=None, bplib_gff=None, bwa=None, samtoo
min_overlap)
gen_vcf.gff_to_vcf(reference, "%s/breakseq_genotyped.gff" % work, sample, "%s/breakseq.vcf" % work)

return 1
return 0

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