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@github-actions github-actions released this 31 May 16:08
v1.0.2
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Welcome! RicePilaf is short for Rice Post-GWAS/QTL Analysis dashboard. Ok, so we are not great at acronyms; but like a flavorful rice pilaf that combines many ingredients, this RicePilaf combines information from multiple rice databases to provide insights into your QTL/GWAS loci.

Installation and Usage

Please visit the wiki.

Changelog

  • Rewrote the (data preparation) workflow Dockerfile. Previously, R 4.3 and Bioconductor 3.17 were installed on top of the python:3.10-bullseye base image. For reproducibility, it is imperative to use these versions of R and Bioconductor. However, the most recent version of Bioconductor (3.19) requires R 4.4, while attempting to install Bioconductor 3.17 packages from source leads to dependency issues.

    As a solution, we rewrote the Dockerfile to use the bioconductor/bioconductor_docker:RELEASE_3_17-R-4.3.0 base image instead. Aside from simplifying the installation of R packages, this change also reduced the image building time from ~24 minutes to ~8 minutes.

  • Simplified the logic for deciding on whether to fetch the Bootstrap and Font Awesome stylesheets and sprites via the jsDelivr CDN or to use the self-hosted versions

  • Added more code documentation, as well as GitHub Actions workflow documentation

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